4B93


Conserved Protein Domain Family
R-SNARE_VAMP7

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cd15871: R-SNARE_VAMP7 
Click on image for an interactive view with Cn3D
SNARE motif of VAMP7
The VAMP-7 (vesicle-associated membrane protein 7, also called synaptobrevin-like protein 1) protein belongs to the R-SNARE subgroup of SNAREs and interacts with syntaxin 7(Qa), syntaxin 8 (Qc) and Vti1b (Qb). The complex is involved in the transport from early endosomes to the lysosome via regulating the transport from multivesicular bodies to the lysosomes. SNARE (soluble N-ethylmaleimide-sensitive factor attachment protein receptor) proteins contain coiled-coil helices (called SNARE motifs) which mediate the interactions between SNARE proteins, and a transmembrane domain. The SNARE complex mediates membrane fusion, important for trafficking of newly synthesized proteins, recycling of pre-existing proteins and organelle formation. SNARE proteins are classified into four groups, Qa-, Qb-, Qc- and R-SNAREs, depending on whether the residue in the hydrophilic center layer of the four-helical bundle is a glutamine (Q) or arginine (R). Qa-, as well as Qb- and Qc-SNAREs, are localized to target organelle membranes, while R-SNARE is localized to vesicle membranes. They form unique complexes consisting of one member of each subgroup, that mediate fusion between a specific type of vesicles and their target organelle. Their SNARE motifs form twisted and parallel heterotetrameric helix bundles.
Statistics
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PSSM-Id: 277224
Aligned: 16 rows
Threshold Bit Score: 112.89
Created: 16-Jul-2013
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
heterotetramerzero layer
Conserved site includes 41 residues -Click on image for an interactive view with Cn3D
Feature 1:heterotetramer interface [polypeptide binding site]
Evidence:
  • Comment:based on homology to other members of the family

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ##  ## ### ###### ### ## ##  ## ###### ### ## ###### ##          
4B93_A       125 DKVMETQAQVDELKGIMVRNIDLVAQRGERLELLIDKTENLVDSSVTFKTTSRNLARAMCMKNIK 189 house mouse
XP_001631076 125 SSIAKVQVELDEIRGIMVKNIDSIASRGERLELLIDKAEDLNSSSLTFKKTSRGLARAMWWKNVK 189 starlet sea anemone
XP_002600838 124 DRVSKVQGDLDELKGIMVKNIDSIAARGERLELLIDKTEDLEATSVTFKKTSKNLARSMCMKNLK 188 Florida lancelet
Q7JYX5       124 DTISRVHGQIDELKDIMVKNIDSLRDRGEKLELLVNKTENLSNNSVAFRKASRNLARQMFWKNIR 188 fruit fly
XP_002400270 124 DNFAKVQGEIDELKGIMVKNIDTVTSRGERLELLVNKTEVLSSTSVTFRKASRNLARSMLIKNIK 188 black-legged tick
EFX90164     125 DTVSQVQGELDDLKDVMVKNIDSLAARGERLELLVNKTESLSASAVTFRKSSRNLANSLFWKNIK 189 common water flea
XP_002116129 125 NKINKVSEDLDELKGIMVRNIESIATRGEKLDLLVDKTEDLEQTSLTFKKSSKKLSRAMCMKNAK 189 Trichoplax adhaerens
XP_795809    125 TRMSEVQQDLEELNQIMVRNIESVSNRGERLELLIDKTEDLETTSLTFKKSSKSLARSMFMKNLK 189 purple urchin
EKC43185     124 DKVEKVQGQVDELKGIMVKNIDNIADRGEKLELLVDKTEELNANAVSFKKSSRGLARDNTDCIAI 188 Pacific oyster
XP_002127203 125 NKVEEVQDQLNDLKGIMVKNIDSIANRGENLNLLVDKTEDLSESAVTFKKQSTTLRRRLWWKNVK 189 Ciona intestinalis

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