Conserved Protein Domain Family
PHD_AF10_AF17

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cd15574: PHD_AF10_AF17 
PHD finger found in protein AF-10 and AF-17
This family includes protein AF-10 and AF-17. AF-10, also termed ALL1 (acute lymphoblastic leukemia)-fused gene from chromosome 10 protein, is a transcription factor encoded by gene AF10, a translocation partner of the MLL (mixed-lineage leukemia) oncogene in leukemia. AF-10 has been implicated in the development of leukemia following chromosomal rearrangements between the AF10 gene and one of at least two other genes, MLL and CALM. It plays a key role in the survival of uncommitted hematopoietic cells. Moreover, AF-10 functions as a follistatin-related gene (FLRG)-interacting protein. The interaction with FLRG enhances AF10-dependent transcription. It interacts with the human counterpart of the yeast Dot1, hDOT1L, and may act as a bridge for the recruitment of hDOT1L to the genes targeted by MLL-AF10. It also interacts with the synovial sarcoma associated SYT protein and may play a role in synovial sarcomas and acute leukemias. AF-17, also termed ALL1-fused gene from chromosome 17 protein, is encoded by gene AF17 that has been identified in hematological malignancies as translocation partners of the mixed lineage leukemia gene MLL. It is a putative transcription factor that may play a role in multiple signaling pathways. It is involved in chromatin-mediated gene regulation mechanisms. It functions as a component of the multi-subunit Dot1 complex (Dotcom) and plays a role in the Wnt/Wingless signaling pathway. It also seems to be a downstream target of the beta-catenin/T-cell factor pathway, and participates in G2-M progression. Moreover, it may function as an important regulator of ENaC-mediated Na+ transport and thus blood pressure. Both AF-10 and AF-17 contain an N-terminal canonical Cys4HisCys3 plant homeodomain (PHD) finger followed by a non-canonical extended PHD (ePHD) finger, Cys2HisCys5HisCys2His. The PHD finger is involved in their homo-oligomerization. In the C-terminal region, they possess a leucine zipper domain and a glutamine-rich region. This family also includes ZFP-1, the Caenorhabditis elegans AF10 homolog. It was originally identified as a factor promoting RNAi interference in C. elegans. It also acts as a Dot1-interacting protein that opposes H2B ubiquitination to reduce polymerase II (Pol II) transcription. This model corresponds to the canonical Cys4HisCys3 PHD finger.
Statistics
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PSSM-Id: 277049
Aligned: 14 rows
Threshold Bit Score: 94.5019
Created: 7-Aug-2013
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
Zn binding siteputative
Feature 1: Zn binding site [ion binding site], 8 residue positions
Conserved feature residue pattern:C C C C H C C CClick to see conserved feature residue pattern help
Evidence:
  • Comment:based on structure evidence that human BRD1 (2KU3) binds two Zn2+ ions through its PHD finger.
  • Comment:The PHD zinc finger is characterized as Cys4HisCys3.
  • Citation:PMID 7583761
  • Citation:PMID 7701562

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #  #             #    #    #  #            #  #
P55198          7 GCCVCSDErGWAENPLVYCDGhaCSVVVHQACYGIVqVPTGPWFCRKC 54   human
Q16Y61          7 GCCVCSDDrGWSENPLVYCDGqsCAVAVHQACYGIVtVPSGPWYCRKC 54   yellow fever mosquito
NP_001071650    8 GCCVCLDErGWAENPLVYCDGqeCSVAVHQACYGIVqVPSGPWFCQRC 55   Ciona intestinalis
EFX90415        7 GCCVCSDDrGWTENPLVYCDGggCTVAVHQACYGIVtVPSGPWFCRKC 54   common water flea
XP_003726165    7 GCCVCGDErGWTENPLVYCDGhgCNVAVHQACYGIVaVPTGPWFCRKC 54   purple urchin
EKC26968        7 GCCVCSDErGWAENPLVYCDGqgCNVAVHQACYGIVhVPKGPWYCRKC 54   Pacific oyster
AAH85650       25 GCCVCSDErGWAENPLVYCDGhgCNVAVHQACYGIVqVPTGPWFCRKC 72   zebrafish
XP_002410800    7 GCCVCSDErGWAENPLVYCDGqgCNVAVHQACYGIVqVPTGPWFCRKC 54   black-legged tick
ELT95750        7 GCCVCSDErGWSENPLVYCDGqqCNVAVHQACYGILtVPSGPWFCRKC 54   Capitella sp. I Grassle & Grassle, 1976
XP_002596975   11 GCCVCSDEhGWAENPLVYCDGhgCNVAVHQACYGIVqVPTGSWFCRKC 58   Florida lancelet

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