1JFF,1FFX,1Z5V,2BTQ,1FFX,2BTO


Conserved Protein Domain Family
Tubulin

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cd06059: Tubulin 
Click on image for an interactive view with Cn3D
The tubulin superfamily and related homologs
The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-terminal nucleotide-binding region, an intermediate taxol-binding region and the carboxy-terminal region which probably constitutes the binding surface for motor proteins. Also included in this group is the mitochondrial Misato/DML1 protein family, involved in mitochondrial fusion and in mitochondrial distribution and morphology.
Statistics
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PSSM-Id: 276963
Aligned: 41 rows
Threshold Bit Score: 290.643
Created: 29-May-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:nucleotide binding site [chemical binding site]
Evidence:
  • Comment:In alpha-tubulin, N-site (non-exchangeable) buried at monomer-monomer interface within dimer
  • Structure:1FFX_C: Bos taurus alpha tubulin with bound GTP (defined using 4.0 A contacts)
    View structure with Cn3D
  • Comment:In beta-tubulin, E-site (exchangeable) exposed on surface of dimer
  • Structure:1JFF_B: Bos taurus beta-tubulinwith bound GDP (defined using 4.0 A contacts)
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               ###  #                                                                   
1JFF_B         3 EIVHIQAGQCGNQIGAKFWEVIsdehgidptgsyhgdsdlq-----------lerinvyyneaagnkyvpRAILVDLEPG 71  cow
1FFX_C         3 ECISIHVGQAGVQIGNACWELYclehgiqpdgqmpsdktigg---------gddsfntffsetgagkhvpRAVFVDLEPT 73  cow
AAF09584       2 SIVTVQLGQCGNQIGFEVFDALlsdshssqglcsmreneay----------qasckerffseeengvpiaRAVLVDMEPK 71  human
XP_001459726   3 QLITIHIGGAGSNIGSKLWYNLsqhrqedlssi--------------------------fqenshqsykpRSIFVNTIDD 56  Paramecium tetr...
XP_001610829   3 DVLSINIGQCGIQVASCFWGMFfknlkldcgnlppdwndvrsfvlntnvnvpsldaspdayndfinnlkaRCILIDTDLS 82  Babesia bovis T2Bo
XP_001428512   3 SALHIHVGGAGIKMGDMLWKLYekeynettqkny-------------------------iydefegnhypQAFFVDTDDR 57  Paramecium tetr...
XP_001451601   3 SAIHLHIGGAGVMIGNELWKLYqkeqtetnvksy-------------------------iynenetnyfpLTLFMDLDDR 57  Paramecium tetr...
CCF75029       3 EIVSFNLGQCGIQLAGQFWQRLaknlthlstqdtlnnvnteii------nrfysesdsspgnglldnyvaRAVLVDTEIG 76  Babesia microti...
CDW72895       3 EIIQVNIGEAGIRIGDNLIRKLysnlkeqdiffeklnesnnqy-------gnkdiqrlyqesmtnglikpRAVFFDLDPE 75  Stylonychia lemnae
XP_001450259   4 SVIHLHIGGAGVMIGDALWKLYekeesdtnvksy-------------------------iynenennnypLALFVDSDEQ 58  Paramecium tetr...
Feature 1                                      #                                       #  # ###  
1JFF_B        72 Tmdsvrsgp--fgqifrpdNFVFGqs-gAGNNWAKGHYtegaelVDSVLDVVRKESESCDCLq-GFQLTHSLGGgTGSGM 147 cow
1FFX_C        74 Videvrtgt--yrqlfhpeQLITGke-dAANNYARGHYtigkeiIDLVLDRIRKLADQCTGLq-GFSVFHSFGGgTGSGF 149 cow
AAF09584      72 VinqtlskaaqsgqwkygqHACFCqkqgSGNNWAYGYSvhgprhEESIMNIIRKEVEKCDSFs-GFFIIMSMAGgTGSGL 150 human
XP_001459726  57 Qvpkyde------pqfspnQFFYTke-dTGNIYTVGHYcvakdlIPKIQDEIRRQVENCDHFs-GFLFTHSISGgFGSGY 128 Paramecium tetr...
XP_001610829  83 Titevlqkq--hhchidneNIVCGte-aAGNNWSVAYFhhgpqyHQTVEDLIDHNLEKCDKTfqYFNITFGLSGgTGGGL 159 Babesia bovis T2Bo
XP_001428512  58 Mihevqrnq---svkfkkhSFFHGt--eDASTFARGLCtigggiEQQALDCIQKQIETMDRLd-EFVITSSISGgTGSGF 131 Paramecium tetr...
XP_001451601  58 Mvnevkknk---linyktnSFVTGke-dAANNYCRAHYtigkeiVDKCLDNIRKQVESVDRId-QFIITSALSGgTGSGF 132 Paramecium tetr...
CCF75029      77 Avndaikdn--qttridsnNIITGte-aTGNNWATAYEcygpkyKESLEDMLRGQVEQCDSLq-CFNLNFSLSGgTGSGL 152 Babesia microti...
CDW72895      76 Sqniltnsi--qdklinteSTYFGle-sSANNCIRGEItigkdiLENCMEIILRQAEQCDNIq-GVIVNHSISGgTGSGL 151 Stylonychia lemnae
XP_001450259  59 Minkvkknq---sikykstSFVSGke-dASNNFCRAFNavgkqlIEQSLDQLRKQIESIDRLd-QFIITSALSGgTGSGF 133 Paramecium tetr...
Feature 1                              #           #                        #                    
1JFF_B       148 GTLLISKIREeyp-driMNTFSVVPSPkvsdtvvEPYNATLSVHQLVen--tDETYCIDNEALYdicfrt---------- 214 cow
1FFX_C       150 TSLLMERLSVdyg-kksKLEFSIYPAPqvstavvEPYNSILTTHTTLeh--sDCAFMVDNEAIYdicrrn---------- 216 cow
AAF09584     151 GAFVTQNLEDqys-nslKMNQIIWPYGtge-vivQNYNSILTLSHLYrs--sDALLLHENDAIHkicakl---------- 216 human
XP_001459726 129 TTLLSSLLKNeyq-ksmSFSFCLMPSPnyrnnviESYNSIMSLNSMVea--fDGVILLQNEAIYqiienq---------- 195 Paramecium tetr...
XP_001610829 160 GNYILDILRDnys-kihRVCNVVTQDSma---aiSPYNTLFCLNHLNev--aSVTNLFSNEALSyhamqktahiiressr 233 Babesia bovis T2Bo
XP_001428512 132 LSNLVSLLKIyyr-kvrCNGFIIFPSSkisnnvvAIYNAVLSMENLMys--fNSITMFDNESMYnfidrq---------- 198 Paramecium tetr...
XP_001451601 133 TSLLLERLSVeygakvdKNAFLIYPSKeisnntvDAFNAVLATHVTIeh--cDSVVMLDNESMYksideq---------- 200 Paramecium tetr...
CCF75029     153 GSYLLELLANdyp-kitRLTNVITQTNdatvatyNTILCLNKLQKFSnmvvcYSNESILDVRYPnsnnfssp-------- 223 Babesia microti...
CDW72895     152 GGSLISRIQIelgikacMSNMIFPSNNavdeiivSPYNAVYGMHTCMey--lSIGNVITNVGLQnhcryn---------- 219 Stylonychia lemnae
XP_001450259 134 AALLLERISKeygrktqKNAFLVYPSQemsnnivDLYNVIYSIDLTLed--cHSVVMLDNQSMYesidsq---------- 201 Paramecium tetr...
Feature 1                #   #                                                                   
1JFF_B       215 -lklttpTYGDLNHLVSATMSGVTTCLrfpg----qlnaDLRKLavNMVPFPrlHFFMPGFAPltsrgsq----qyralt 285 cow
1FFX_C       217 -ldierpTYTNLNRLIGQIVSSITASLrfdg----alnvDLTEFqtNLVPYPraHFPLATYAPvisaeka----yheqls 287 cow
AAF09584     217 -mnikqiSFSDINQVLAHQLGSVFQPTysaessfhyrrnPLGDLmeHLVPHPefKMLSVRNIPhmsenslayttftwagl 295 human
XP_001459726 196 -ldiefpSYNEVNQVITQPIISLLKFNqq---------qSLQMLklNLWNKNklNIWSCSFGPlinyd--------qkhf 257 Paramecium tetr...
XP_001610829 234 neakkehGFSGENEIISKHIKDISMASvsek----ypsfSMSSVlnTLIPFPelNLVCPQMVPehvyr--------dgms 301 Babesia bovis T2Bo
XP_001428512 199 -ldldfvDYSQLNNLVAQIISAYTGIRrfn-------seDNSIFfkNLCPHPrlHFLIPSYSKmtlindy----arkele 266 Paramecium tetr...
XP_001451601 201 -igldyvDYTHLNNLVSQIISSYTGLRrfc-------niDNSKLftGLCPYPrvHFVIPSYGPlasindynnkeltekql 272 Paramecium tetr...
CCF75029     224 tpaecnkYFGPINESIHDFLMPVLMILgnsk----yissHIDTLvsNLTPFPglNYCSAGVSSlgfkev------ksdlt 293 Babesia microti...
CDW72895     220 -krienpGIPEINDLITDGLSILFQHLmqrnt--sgrvlDLQDLcnSLQQLPdlRYMTPSLVVdtysslm---ysdekti 293 Stylonychia lemnae
XP_001450259 202 -fgldfvDYTLLNNLISQLISSYTGLRrfs-------qiDNKKLlsGLCSYDriHYITPSYGPlatindq----ikyeln 269 Paramecium tetr...
Feature 1                                                                                        
1JFF_B       286 VPELTQQMFDaknmmaa---------------------cdprhgRYLTVAAVFRGrm------sMKEVDEQMLNVQNKns 338 cow
1FFX_C       288 VAEITNACFEpanqmvk---------------------cdprhgKYMACCLLYRGdv------vPKDVNAAIATIKTKrt 340 cow
AAF09584     296 LKHLRQMLISnakmeegidrhvwpplsglpplskmslnkdlhfnTSIANLVILRGkd-----vqSADVEGFKDPALYTsw 370 human
XP_001459726 258 SKKITSNSLKdiisqnsy-------------------icnkskpNYKQAFLYAEQinq----tlLSKTLSELVENKQYsi 314 Paramecium tetr...
XP_001610829 302 TEGLINELLKsqhrisp--------------------idqkiknAPIAMAIYGDF---------DYTSLKYIKRLKLKhn 352 Babesia bovis T2Bo
XP_001428512 267 QREFIQLLLKkdqkly----------------------qcsttpNYICTALLFRQkqlnpfygkLDQALNNLNNYFGQss 324 Paramecium tetr...
XP_001451601 273 ISQITKQSLRlfqs--------------------------eihpEHICASLVHRSkyhn-qffgQQDLTLQKMKIKNQds 325 Paramecium tetr...
CCF75029     294 IDQIFWQAMQnntils-----------------------pisnaKSHSLGIALFGatk----fsNREVSMQATRIAFKnd 346 Babesia microti...
CDW72895     294 ANELTKSAFDksyqf------------------------nhgaySKLQDAIPQSFqvsshmysgQAQIRDVMTTLKQMtt 349 Stylonychia lemnae
XP_001450259 270 EKQLISYITKpeqrlf----------------------qnkikpYHLSAALVHRSkgen-qffgQSDQAFQKMKIRYQes 326 Paramecium tetr...
Feature 1                                                                                        
1JFF_B       339 syf------vewipNNVKTAVCDippr--------glkMSATFIGNStaIQELFKRISEQFTAMFRRKAFLHWYTgegm- 403 cow
1FFX_C       341 iqf------vdwcpTGFKVGINYepptvvpggdlakvqRAVCMLSNTtaIAEAWARLDHKFDLMYAKRAFVHWYVgegm- 413 cow
AAF09584     371 lkp-------vnafNVWKTQRAFsk-----------yeKSAVLVSNSqfLVKPLDMIVGKAWNMFASKAYIHQYTkfgi- 431 human
XP_001459726 315 yqqg-----qegqiKQFKEPFQQins----------qkENLVFIHKStgIAEQLNQLHKNAQILYQKRAFMHWYVgigie 379 Paramecium tetr...
XP_001610829 353 mi--------gwmrDGIHVSLSGvssrnt----kedkpDGMCGMSNDcaISSFLGKSISNFERLYSKKAFLHHFSdtle- 419 Babesia bovis T2Bo
XP_001428512 325 -------------qIYQCKSSNYqvlpe-----laemkQTGTFFSNDtsIVSSLQALGENFDKYFCKRAFLQYYKpegl- 385 Paramecium tetr...
XP_001451601 326 ------------pnVFECLSANYttipe-----laqlkQTGIFLSNDasLFNYFELLGKKYDYVYAKRAFVHWFVgegc- 387 Paramecium tetr...
CCF75029     347 ml--------synrNGVKLYLKSstne-------tdmyDKLCVLDNNcsIHSYLENVISSFQKLYSKKAFIHHFKdiid- 410 Babesia microti...
CDW72895     350 viqqksepqmylmnDNFFVSIQDsliarrd--eeeyskLKVFSLSQDyaMVNVFQELAENFDKLYSKRAFLHWYLgegp- 426 Stylonychia lemnae
XP_001450259 327 ------------pyVLQCISQNYtvipe-----laqlkQTGVFLSNDlsMLNYLEIILKKFYKVFDKRAFLHWFTgegg- 388 Paramecium tetr...
Feature 1                                
1JFF_B       404 ---demeFTEAESNMNDLVSEYQQ 424 cow
1FFX_C       414 ---eegeFSEAREDMAALEKDYEE 434 cow
AAF09584     432 ---eeedFLDSFTSLEQVVASYCN 452 human
XP_001459726 380 dqsirweFSSFEEMQNNYAIDVSN 403 Paramecium tetraurelia strain d4-2
XP_001610829 420 ----dgdFSSVKHNMESLQDVYTT 439 Babesia bovis T2Bo
XP_001428512 386 ---eereIIKARYDLENLIKQYQK 406 Paramecium tetraurelia strain d4-2
XP_001451601 388 ---esgeMSECREDLAALSKDYEE 408 Paramecium tetraurelia strain d4-2
CCF75029     411 ----daqFQQVNENITEVAQTYRE 430 Babesia microti strain RI
CDW72895     427 ---segfFGESREDLANIIQRYEE 447 Stylonychia lemnae
XP_001450259 389 ---gfgwVQECMSKFEYLIADYKE 409 Paramecium tetraurelia strain d4-2

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