1OVA,1JRR,1XQJ


Conserved Protein Domain Family
ov-serpin

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cd02044: ov-serpin (this model, PSSM-Id:238999 is obsolete)
Click on image for an interactive view with Cn3D
ovalbumin family of serpins (ov-serpins). Family of closely related proteins, whose members can be secreted (ovalbumin), cytosolic (leukocyte elastase inhibitor, LEI), or targeted to both compartments (plasminogen activator inhibitor 2, PAI-2). This subgroup corresponds to clade B of the serpin superfamily. In general, serpins exhibit conformational polymorphism shifting from native to cleaved, latent, delta, or polymorphic forms. Many serpins, such as antitrypsin and antichymotrypsin, function as serine protease inhibitors which regulate blood coagulation cascades. Non-inhibitory serpins perform many diverse functions such as chaperoning proteins or transporting hormones. Serpins are of medical interest because mutants can cause blood clotting disorders, emphysema, cirrhosis, and dementia.
Statistics
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PSSM-Id: 238999
Aligned: 4 rows
Threshold Bit Score: 593.337
Created: 9-Nov-2004
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
reactive center
Conserved site includes 17 residues -Click on image for an interactive view with Cn3D
Feature 1:reactive center loop
Evidence:
  • Structure:1OVA_A; has a helix in the distal half of the RC loop.
    View structure with Cn3D
  • Comment:depending on the conformational state, the RC loop is surface accessible in the active form or buried and inserted as the central beta strand in the inactive form.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
1OVA_A      4 IGAASMEFCFDVFKELKvhhanENIFYCPIAIMSALAMVYLGAkDSTRTQINKVVRFdklpgfgdsieaqcgtsvnvHSS 83  chicken
1JRR_A      4 LCVANTLFALNLFKHLAkasptQNLFLSPWSISSTMAMVYMGSrGSTEDQMAKVLQFnevga----------aadkiHSS 73  human
1XQJ_A     18 LQLANSAFAVDLFKQLSekeplGNVLFSPIALSTSLSLAQVGAkGDTANEIGQVLHFenv--------------kdvPFG 83  human
AAH82925   18 ICTANNAFTIDVLKEVSknsagQNVVFSSMSIMISLAMVYLGArGNTAGDMRKALHFddi--------------edvHTH 83  African clawed frog
Feature 1                                                                                     
1OVA_A     84 LRDILNQItkpndVYSFSLASRLYAEERYPILPEYLQCVKELYrggLEPINFQtaadqARELINSWVESQTNGIIRNVLQ 163 chicken
1JRR_A     74 FRSLSSAInastgNYLLESVNKLFGEKSASFREEYIRLCQKYYssePQAVDFLecaeeARKKINSWVKTQTKGKIPNLLP 153 human
1XQJ_A     84 FQTVTSDVnklssFYSLKLIKRLYVDKSLNLSTEFISSTKRPYakeLETVDFKdkleeTKGQINNSIKDLTDGHFENILA 163 human
AAH82925   84 FQVLLKEMmknnnDYTLTTVNKLFGEKRYNFLPSFLKAINKFYgtlLEKVDFSfnpeaTRQYINAWIQQKTKGKIQNLLP 163 African clawed frog
Feature 1                                                                                     
1OVA_A    164 PssvDSQTAMVLVNAIVFKGLWEKAFKDEDTQAMPFRVTeqesKPVQMMYQIglFRVASMasekMKILELPFAsg-tMSM 242 chicken
1JRR_A    154 EgsvDGDTRMVLVNAVYFKGKWKTPFEKKLNGLYPFRVNsaqrTPVQMMYLRekLNIGYIedlkAQILELPYAg--dVSM 231 human
1XQJ_A    164 DnsvNDQTKILVVNAAYFVGKWMKKFSESETKESPFRVNktdtKPVQMMNMEatFSMGNIdsinSKIIELPFQnk-hLSM 242 human
AAH82925  164 EtsiSSNTALVVTNTLYFLANWTTQFSEEATSKAPFTLItneqIKVNMMATMntFNMNRIeklgMSVLELPYGdkkdLNM 243 African clawed frog
Feature 1                                                                                     
1OVA_A    243 LVLLPDev----sGLEQLESIINFEKLTEWTssNVMEERKikVYLPRMKMEEKYNLTSVLMaMGITDVFSss-aNLSGIS 317 chicken
1JRR_A    232 FLLLPDeiadvstGLELLESEITYDKLNKWTskDKMAEDEveVYIPQFKLEEHYELRSILRsMGMEDAFNkgraNFSGMS 311 human
1XQJ_A    243 FILLPKdvedestGLEKIEKQLNSESLSQWTnpSTMANAKvkLSIPKFKVEKMIDPKASLEnLGLKHIFSedtsDFSGMS 322 human
AAH82925  244 IIMLPDns----tVLAKVDREISYEKLNKWTs-ENMSPNYmtVYLPRFRMEKSFSLKKVLSsLGMSSAFSqgraNFSGME 318 African clawed frog
Feature 1                          ###########           ######                      
1OVA_A    318 SAESLKISQAVHAAHAEINEAGREVVGSAEAGvdaas--vseeFRADHPFLFCIKHiatnAVLFFGRCVSP 386 chicken
1JRR_A    312 ERNDLFLSEVFHQAMVDVNEEGTEAAAGTGGVmtgrtghggpqFVADHPFLFLIMHkitnCILFFGRFSSP 382 human
1XQJ_A    323 ETKGVALSNVIHKVSLEITEDGGDSIEVPGARilqh----kdeLNADHPFIYIIRHnktrNIIFFGKFSSP 389 human
AAH82925  319 RQQTLYVSDVHHKTFLEVDEKGTEAASATGSVmsirs-layeeFKADRPFHFFIRHnknnCILLYGKFYKP 388 African clawed frog

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