1EIY,1JJC


Conserved Protein Domain Family
PheRS_alpha_core

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cd00496: PheRS_alpha_core 
Click on image for an interactive view with Cn3D
Phenylalanyl-tRNA synthetase (PheRS) alpha chain catalytic core domain. PheRS belongs to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. While class II aaRSs generally aminoacylate the 3'-OH ribose of the appropriate tRNA, PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. PheRS is an alpha-2/ beta-2 tetramer.
Statistics
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PSSM-Id: 238277
Aligned: 43 rows
Threshold Bit Score: 238.984
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 29 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1JCC_A: binds Phe-AMP, defined using 4.5 A contacts
    View structure with Cn3D
  • Structure:1EIY_A: binds tRNA, defined using 4.5 A contacts
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                    ###                              
1EIY_A    101 HPITLMERELVEIFRalgYQAVEGP-EVESEFFNFDALNIPEHHPARDMWDTFWLTGegfrlegp--------------- 164 Thermus thermophilus
1JJC_A    101 HPITLMERELVEIFRalgYQAVEGP-EVESEFFNFDALNIPEHHPARDMWDTFWLTGegfrlegp--------------- 164 Thermus thermophilus
Q8ZX61    219 HFFNEFLDYVREVMIglgFEEVRGP-VLEVEFWNFDALFQAQDHPAREVHDTFYVQWsgpletppehlmesvgr------ 291 Pyrobaculum aeroph...
Q8TUA2    234 HPYRRLIEQMRQIFLemgFTEIKGG-IIQSSFWNFDALFQPQDHPARDMQDTFHLGSicqlpaeysdkvaamhesg---- 308 Methanosarcina ace...
Q9W3J5    224 HPLLKVRTEFRQIFLemgFSEMPTNnYVESSFWNFDALYQPQQHPARDAHDTFFVNHpakshkfpqdylervkkvhs--v 301 fruit fly
Q9Y285    225 HPLLKVRSQFRQIFLemgFTEMPTDnFIESSFWNFDALFQPQQHPARDQHDTFFLRDpaealqlpmdyvqrvkrths--q 302 human
P95961    216 HYFREFLEKVKDIMIslgFKEINTG-YIEMEFYNFDLLFQPQDHPAREIHDSFSVEGsgkiedkdllnnvkei------- 287 Sulfolobus solfata...
O42870    224 HPLMKVREEFRKFFFelgFEEMPTNnFVESGFWNFDALFVPQQHSARDAQDTFFLKVpastdklpdpeyvarvkatheng 303 fission yeast
P15625    228 HPLNKVREEFRQIFFsmgFTEMPSNqYVETGFWNFDALYVPQQHPARDLQDTFYIKDpltadlpddktymdnikavhe-q 306 baker's yeast
O58391    238 QPYRVFLDKIRRRLIemgFIEMTVDsLIETQFWNFDALFQPQNHPAREWTDTYQLKYpekgylpdenlvskvkeahe--r 315 Pyrococcus horikoshii
Feature 1                             # #  #                          # #    ###  # # #       
1EIY_A    165 -----------lgeevegrLLLRTHTSPMQVRYMVah------tpPFRIVVPGRVFRFEqtDATHEAVFHQLEGLVVGEg 227 Thermus thermophilus
1JJC_A    165 -----------lgeevegrLLLRTHTSPMQVRYMVah------tpPFRIVVPGRVFRFEqtDATHEAVFHQLEGLVVGEg 227 Thermus thermophilus
Q8ZX61    292 --vheekwrykwdrkkalnPVLRTQTTATTIRALAerg-----dgEYKVFTIGRVFRPEklDPKHSMEFHQLDGIVVGPg 364 Pyrobaculum aeroph...
Q8TUA2    309 gdidscgwggiwdrelarrNVLRTHTTSVTIKYLAdnp-----epPVKAFCIDRAYRREtiDPTHTPEFEQLEGVVMDKd 383 Methanosarcina ace...
Q9W3J5    302 ggygskgygydwkleeaqkNLLRTHTTAVSARMLYklanqeggfkAAKYFSIDKVFRNEtlDATHLAEFHQVEGVIADVg 381 fruit fly
Q9Y285    303 ggygsqgykynwkldearkNLLRTHTTSASARALYrlaqk-kpftPVKYFSIDRVFRNEtlDATHLAEFHQIEGVVADHg 381 human
P95961    288 ---hekfwkyewkqditlrLMLRSQTTATTARVLAsrp-----kaPQKVFTLGKVFRPDaiDATHLIEFHQLDGVIIDNn 359 Sulfolobus solfata...
O42870    304 getkgigyrapfsleetrkLVLRTHTTAVSANMLYklaq--ngfhPAKYFSIDRVFRNEtvDATHLAEFHQVEGVICDRn 381 fission yeast
P15625    307 grfgsigyrynwkpeecqkLVLRTHSTAISARMLHdlak---dpkPTRLFSIDRVFRNEavDATHLAEFHQVEGVLADYn 383 baker's yeast
O58391    316 glagsrgwgyvwsperamlLMPRAHATALSARELAkgi-----eiPGKYFTIQRVFRPDvlDRTHLIEFNQIDGFVASEd 390 Pyrococcus horikoshii
Feature 1                                   # ##                 ######                       
1EIY_A    228 iaMAHLKGAIYELAQALfgpdSKVRFQPVYFPFVEPGAQFAVWWpeggkWLELGGAGMVHPKVFQAVDayrerlglppay 307 Thermus thermophilus
1JJC_A    228 iaMAHLKGAIYELAQALfgpdSKVRFQPVYFPFVEPGAQFAVWWpeggkWLELGGAGMVHPKVFQAVDayrerlglppay 307 Thermus thermophilus
Q8ZX61    365 ltFKHLLGQLEEIAKALg--mTKVKFRPAYFPFTSPSVEVYAQHpk-lgWVEFGGAGIFRPEVTEPLGvk---------- 431 Pyrobaculum aeroph...
Q8TUA2    384 msFADLLGLLAEFYHRMg--fEEVRFRPGYFPYTEPSVEPEVYVdg-lgWVELGGAGVFRKEVTEPFGi----------- 449 Methanosarcina ace...
Q9W3J5    382 ltLGDLIGTLYEFFRKLg--iTQLEFKPAYNPYTEPSMEIFCYHpglakWIEVGNSGVFRPEMLLPMGlp---------- 449 fruit fly
Q9Y285    382 ltLGHLMGVLREFFTKLg--iTQLRFKPAYNPYTEPSMEVFSYHqglkkWVEVGNSGVFRPEMLLPMGlp---------- 449 human
P95961    360 ftFKELLGVLKEIFYRLg--iKEVKFKPAYFPFTEPSVEAYGYLek-lgWVEMCGAGLLRPEILSSVGi----------- 425 Sulfolobus solfata...
O42870    382 itLGDLIGFLEVFFGKMn--vKNLRFKPAYNPYTEPSLEVFSYHeklgkWVEVGNSGMFRPEMLEPMGlp---------- 449 fission yeast
P15625    384 itLGDLIKFMEEFFERMg--vTGLRFKPTYNPYTEPSMEIFSWHeglqkWVEIGNSGMFRPEMLESMGlp---------- 451 baker's yeast
O58391    391 ltFRHLLGILKRFAIEIag-aKKVKFFPDYYPFTEPSVQLSAYHpe-lgWVEFGGAGIFREEMTEALGi----------- 457 Pyrococcus horikoshii
Feature 1            ####  #          #         
1EIY_A    308 rgVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLK 341 Thermus thermophilus
1JJC_A    308 rgVTGFAFGLGVERLAMLRYGIPDIRYFFGGRLK 341 Thermus thermophilus
Q8ZX61    432 -kSRVLAWGWGLDRIAMILLGIDDIRELFTKDLE 464 Pyrobaculum aerophilum
Q8TUA2    450 -kEPVLAWGLGVSRLAMLKLGLKDLRLLYQSDID 482 Methanosarcina acetivorans
Q9W3J5    450 enVNVIAWGLSLERPTMIKYGINNIRDLVGPKVD 483 fruit fly
Q9Y285    450 enVSVIAWGLSLERPTMIKYGINNIRELVGHKVN 483 human
P95961    426 -dSTAGAWGIGIERLAMSFLNISDIRLLYSNNIE 458 Sulfolobus solfataricus
O42870    450 kdVRCLGFGLSLERPTMIKYGVADIRQLIGPKVN 483 fission yeast
P15625    452 kdLRVLGWGLSLERPTMIKYKVQNIRELLGHKVS 485 baker's yeast
O58391    458 -kVPVIAWGIGIDRLAMFKLGVDDIRYLFSYDLK 490 Pyrococcus horikoshii

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