2H8H,2YT6,1W1F,1FYN,1X27,2KGT,1QCF,2D8J,1PRL,1AVZ


Conserved Protein Domain Family
SH3_Src_like

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cd11845: SH3_Src_like 
Click on image for an interactive view with Cn3D
Src homology 3 domain of Src kinase-like Protein Tyrosine Kinases
Src subfamily members include Src, Lck, Hck, Blk, Lyn, Fgr, Fyn, Yrk, Yes, and Brk. Src (or c-Src) proteins are cytoplasmic (or non-receptor) PTKs which are anchored to the plasma membrane. They contain an N-terminal SH4 domain with a myristoylation site, followed by SH3 and SH2 domains, a tyr kinase domain, and a regulatory C-terminal region containing a conserved tyr. They are activated by autophosphorylation at the tyr kinase domain, but are negatively regulated by phosphorylation at the C-terminal tyr by Csk (C-terminal Src Kinase). However, Brk lacks the N-terminal myristoylation sites. Src proteins are involved in signaling pathways that regulate cytokine and growth factor responses, cytoskeleton dynamics, cell proliferation, survival, and differentiation. They were identified as the first proto-oncogene products, and they regulate cell adhesion, invasion, and motility in cancer cells, and tumor vasculature, contributing to cancer progression and metastasis. Src kinases are overexpressed in a variety of human cancers, making them attractive targets for therapy. They are also implicated in acute inflammatory responses and osteoclast function. Src, Fyn, Yes, and Yrk are widely expressed, while Blk, Lck, Hck, Fgr, Lyn, and Brk show a limited expression pattern. This subfamily also includes Drosophila Src42A, Src oncogene at 42A (also known as Dsrc41) which accumulates at sites of cell-cell or cell-matrix adhesion, and participates in Drosphila development and wound healing. It has been shown to promote tube elongation in the tracheal system, is essential for proper cell-cell matching during dorsal closure, and regulates cell-cell contacts in developing Drosophila eyes. The SH3 domain of Src kinases contributes to substrate recruitment by binding adaptor proteins/substrates, and regulation of kinase activity through an intramolecular interaction. SH3 domains are protein interaction domains that bind to proline-rich ligands with moderate affinity and selectivity, preferentially to PxxP motifs. They play versatile and diverse roles in the cell including the regulation of enzymes, changing the subcellular localization of signaling pathway components, and mediating the formation of multiprotein complex assemblies.
Statistics
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PSSM-Id: 212779
Aligned: 37 rows
Threshold Bit Score: 67.2224
Created: 2-Jun-2011
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
peptide ligand
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:peptide ligand binding site [polypeptide binding site]
Evidence:
  • Comment:SH3 domains typically bind proline-rich ligands, preferentially to PxxP motifs.
  • Structure:1FYN; Human Fyn tyrosine protein kinase SH3 domain binds proline-rich peptide (ppayppppvp); contacts at 4A.
    View structure with Cn3D
  • Citation:PMID 7664083
  • Structure:1PRL; Gallus gallus Src SH3 domain binds PLR1 ligand (afapplprr); contacts at 4A.
    View structure with Cn3D
  • Citation:PMID 1280858
  • Structure:1AVZ; Human Fyn tyr kinase SH3 domain binds V1 Nef-protein; contacts at 4A.
    View structure with Cn3D
  • Citation:PMID 9351809
  • Comment:flanking hinge and loops (RT and n-Src) confer sequence specificity for ligand residues outside the core binding motif

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1             # #  ##  #                   ###                # # ##
2H8H_A        87 TFVALYDYESRTetDLSFKKGERLQIVNNt---eGDWWLAHSLst----gQTGYIPSNY 138  human
1FYN_A         6 LFVALYDYEARTedDLSFHKGEKFQILNSs---eGDWWEARSLtt----gETGYIPSNY 57   human
2KGT_A        12 KYVGLWDFKSRTdeELSFRAGDVFHVARKe----EQWWWATLLdeaggavAQGYVPHNY 66   human
XP_003372240 477 FLVALHNYESMAdgDLSFKKGEIMMLLDNs---nYDWWYVKHLst----eKAGYVPRTF 528  Trichinella spiralis
AAF64151     116 HYVALFDYNARTeeETFLSRRDEVLLLADt---dSEWWLVQNLss----gRKGYVPSSF 167  Schistosoma mansoni
P00528        99 VVVALYDYKSRDesDLSFMKGDRMEVIDDt---eSDWWRVVNLtt----rQEGLIPLNF 150  fruit fly
NP_490866     75 TLVALYPYDSRAdgDLSFQKGDAMYLLDHs---nCDWWYVRHQrt----gQTGYVPRNF 126  nematode
XP_002938349  64 SYVALYSYEGRTpdELSFKAGDQMLIIDTt---hASWWKAKLLrtr--gkAEGYVPFNY 117  western clawed frog
XP_002114314  62 IVIALYDYEARTkdDLSFKAGDQMEVATKtaqsnQDWWSARSIrt----kNIGFIPRNF 116  Trichoplax adhaerens
ADY44498      41 ILVALYNYDSRTkdELSFRKGSQMTLISKs---nGDWWLVEHEn-----gTRGYVPRNY 91   pig roundworm

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