Conserved Protein Domain Family
GST_C_MetRS_N

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cd10307: GST_C_MetRS_N 
Glutathione S-transferase C-terminal-like, alpha helical domain of Methionyl-tRNA synthetase from higher eukaryotes
Glutathione S-transferase (GST) C-terminal domain family, Methionyl-tRNA synthetase (MetRS) subfamily; This model characterizes the GST_C-like domain found in the N-terminal region of MetRS from higher eukaryotes. Aminoacyl-tRNA synthetases (aaRSs) comprise a family of enzymes that catalyze the coupling of amino acids with their matching tRNAs. This involves the formation of an aminoacyl adenylate using ATP, followed by the transfer of the activated amino acid to the 3'-adenosine moiety of the tRNA. AaRSs may also be involved in translational and transcriptional regulation, as well as in tRNA processing. MetRS is a class I aaRS, containing a Rossman fold catalytic core. It recognizes the initiator tRNA as well as the Met-tRNA for protein chain elongation. The GST_C-like domain of MetRS from higher eukaryotes is likely involved in protein-protein interactions, to mediate the formation of the multi-aaRS complex that acts as a molecular hub to coordinate protein synthesis. AaRSs from prokaryotes, which are active as dimers, do not contain this GST_C-like domain.
Statistics
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PSSM-Id: 198340
Aligned: 9 rows
Threshold Bit Score: 138.401
Created: 1-Apr-2011
Updated: 17-Jan-2013
Structure
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Aligned Rows:
 
putativeputative
Feature 1:putative protein interface 1 [polypeptide binding site]
Evidence:
  • Comment:based on similarity to other family members
  • Comment:Protein interface 1 is a surface used by GST-fold domains to bind other GST-fold domains in this subfamily, to facilitate complex formation.
  • Comment:Protein interface 1 corresponds to the same interacting surface used in classical GST dimerization.
  • Comment:Saccharomyces cerevisiae Arc1p uses this interacting surface to bind methionyl-tRNA synthetase.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                              ### ###### ##           #  #     ##                        
NP_004981      77 QDDLTNQWLEWEATELQPALSAALYYLVVQGKKGEDVLGSv--RRALTHIDHSLSRQNCPflageTESLADIVLWGALYP 154  human
AAH57757       75 MCDLSNQWLEWEAAELQPALSAALYAHVVQGKKKEDVMATi--SASLKHLDQSLAGKSSPylikdALTVVDIVVWGSIYP 152  African clawe...
AAQ98000       75 ATDATNQWLEWEATNLQPAVLQSLQLVALQGKRVEAAAVM---KEPLSWLEQSLSKRKTSfltdeVVSVADVVLWAALYP 151  zebrafish
XP_002607629   68 DDFQVDEWLEWESSQLQPFLAPYLVTCIGQGKKDSALLAAv--VPLLEHLDKALKDRQYIvg--sSVTSADVVVWSALFP 143  Florida lancelet
NP_001079984   75 MCDLSNQWLEWEAAELQPALSAALYAHVVQGKKKEDVMATi--SASLKHLDQSLAGKSSPylikdALTVVDIVVWGSIYP 152  African clawe...
NP_001086723   75 MCDQSNQWLEWEAVELQPALSAALYAHVVQGKKKEDVLVTv--SASLRHLDQSLAGKSSPylvkdVLTVVDIVVWGSIYP 152  African clawe...
AAM50099       63 KYLFVGEGQQRDEWLEWSATLLAPALAHHMAVGHKADANAlpvLNALVKKLDDKLKATPYla-gdKPSAADIAIWSLLAP 141  fruit fly
XP_317601      67 PGDDASKVVQRDEWLEWSSKRLAPALTHNMAVGSRADPNTkpiLNTLVKMLDDCLSNSTFlt-gdKISSADVAVWSLLAP 145  Anopheles gam...
EFR21973      223 DEDASSTVVQRDEWLEWSTKRLAPALTHNMAVGSRSDPNTkpiLNTLVKMLEDCLSKSTFlt-gdKLTSADVSVWSLIAP 301  Anopheles dar...
Feature 1                                     
NP_004981     155 LLQDpayl---peeLSALHSWFQTLSTQ 179  human
AAH57757      153 LIVDasnl---peeMASLKRWFQNVSQL 177  African clawed frog
AAQ98000      152 LLSDsafe---pgdLQAVRGWFERVCSV 176  zebrafish
XP_002607629  144 LYGDsskladeltrYSGIVDWFQNLSTH 171  Florida lancelet
NP_001079984  153 LIVDasnl---peeMASLKRWFQNVSQL 177  African clawed frog
NP_001086723  153 LIVDassl---peeMTSLKRWFQNLNQL 177  African clawed frog
AAM50099      142 DGTLkga-----qnVDNLRDWYGRVKAL 164  fruit fly
XP_317601     146 DGTLkga-----vnIDNVLRWYRQITAL 168  Anopheles gambiae str. PEST
EFR21973      302 DGTLkga-----vnIDNLLRWYRQISTL 324  Anopheles darlingi

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