1EUQ,2HZ7


Conserved Protein Domain Family
GlnRS_core

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cd00807: GlnRS_core 
Click on image for an interactive view with Cn3D
catalytic core domain of glutaminyl-tRNA synthetase
Glutaminyl-tRNA synthetase (GlnRS) cataytic core domain. These enzymes attach Gln to the appropriate tRNA. Like other class I tRNA synthetases, they aminoacylate the 2'-OH of the nucleotide at the 3' end of the tRNA. The core domain is based on the Rossman fold and is responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. GlnRS contains the characteristic class I HIGH and KMSKS motifs, which are involved in ATP binding. These enzymes function as monomers. Archaea and most bacteria lack GlnRS. In these organisms, the "non-discriminating" form of GluRS aminoacylates both tRNA(Glu) and tRNA(Gln) with Glu, which is converted to Gln when appropriate by a transamidation enzyme.
Statistics
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PSSM-Id: 185676
Aligned: 21 rows
Threshold Bit Score: 402.785
Created: 6-Mar-2002
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 24 residues -Click on image for an interactive view with Cn3D
Feature 1:active site [active site]
Evidence:
  • Structure:1EUQ_A; E. coli GlnRS binds 5'O[N-(L-Gln)sulfamoyl] adenosine, defined using 4.0 A contacts
    View structure with Cn3D
  • Comment:tRNA is required for amino acid activation

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1          #####     # ## ##                   # ##                                    
1EUQ_A      27 TVHTRFPPEPNGYLHIGHAKSICLNFGIAQDYKGQCNLRFDDTNPVKEDIEYVESIKNDVEWLGFHWsg----nVRYSSD 102  Escherichia coli
NP_492711  193 KVVVRFPPEASGYLHIGHAKAALLNQYYQQAFEGQLIMRFDDTNPAKENAHFEHVIKEDLSMLNIVPd-----rWTHSSD 267  Caenorhabditis e...
NP_586261  197 RVVTRFPPEPNGILHIGHAKAINLNFEYAKKFGGYTYLRYDDTNPKNEEAEYFDSIYEDVRWLGFEPy-----kVTASSD 271  Encephalitozoon ...
AAM08833   205 EVCVRFAPEPSGYLHIGHAKAALLNKYFAERYQGRLIVRFDDTNPSKESNEFVENLLKDIETLGIKYd-----aVTYTSD 279  Japanese rice
O13775     206 KVVTRFPPEPSGYLHIGHAKAALLNQYFANKYHGKLIVRFDDTNPSKENSEFQDAILEDVALLGIKPd-----vVTYTSD 280  fission yeast
BAC03916   201 KVVTRFPPEASGYMHIGHVKAAMLNYYYAKRYQGKLLLRFDDTNPSKEKEEFETSIIEDLAKLGIKAd-----lFSHTSD 275  human
Q8Y199      44 PIITRFPPEPNGYLHIGHAKSIWVNFGLAKEYGGRCHLRFDDTNPVKEDTEYVDSIIDAVHWLGYSWqngtgehLYYASD 123  Ralstonia solana...
EAA21608    80 YVITRFPPEPNGYLHLGHAKSICLNFGLSQKYGGQTHLRFDDTNPVTEDIRYINSIQEDVKWLGFNWne----hLYYASD 155  Plasmodium yoeli...
EAA22405   275 KVVTRFPPEPSGYLHIGHIKAAFLNNYYANIYEGKMLLRFDDTNPVLEDVKFENSIMEDLKTLGIKYe-----kISYTSD 349  Plasmodium yoeli...
NP_906033   34 RIQTRFPPEPNGYLHIGHAKAICIDFGIAQRYGGVCNLRFDDTNPVKEDVEYVDAIREDIEWLGFHWg-----nIYYASD 108  Porphyromonas gi...
Feature 1                                                                                      
1EUQ_A     103 YFDQLHAYAIELINKGLAYVdeltpeqireyrgtltqpgknspyrdrsveenlalfek-----mraggfeegkaclraki 177  Escherichia coli
NP_492711  268 HFEMLLTMCEKLLKEGKAFVddtdtetmrnereqrqdsrnrsntpeknlqlweemk---------kgspkgltccvrmki 338  Caenorhabditis e...
NP_586261  272 YFDKMTEFGFQLIRKGKAYVchlsqdeicerrrqyvsdgtndrshlsqyrdrpvsenlrlfqemvdgkweegkaclrfkm 351  Encephalitozoon ...
AAM08833   280 YFPKLMEMAEKLIKQGKAYVddtpkeqmrsermdgveskcrnntveenlslwkemi---------ngsergmqccvrgkl 350  Japanese rice
O13775     281 YLDTIHQYCVDMIKSGQAYAddtdvetmrhertegipskhrdrpieesleilsemd---------kgsdvglknciraki 351  fission yeast
BAC03916   276 YFDVILDYARQMIREGLAFMdntdqetmrkermerkesklrntspeenlrlfealc---------rgepevqdyclraki 346  human
Q8Y199     124 YFEQLYGFAEVLIQRGAAYIdsqsaeqiaanrgdftrpgtpspfrdrsveenlalfrd-----mragkyqdgqhvlrari 198  Ralstonia solana...
EAA21608   156 YFDQLYEWALQLIKQGDAYVddqtieeirknrgslkepginspyrnrsieenlvlfen-----mklgkykegekvlraki 230  Plasmodium yoeli...
EAA22405   350 YFQLLEEYCIKLIKMNKAYAddtnvdemrnqrgegiesvnrnnsidtnlklfeemrn--------gtdigkkncirakid 421  Plasmodium yoeli...
NP_906033  109 YFQELYDFAERLIREGHAYVdeqtaeqiaaqkgsptvpgtaspfrdrpaeesldlfrr-----mnvgefeegamtlraki 183  Porphyromonas gi...
Feature 1                                        #   #            ###  #  #                    
1EUQ_A     178 dmaspfivmrdpvlyrikfaeHHQTGNKWCIYPMYDFTHCISDALEGITHSLCTLEFQDNRRLYDWVLDNITi-----pV 252  Escherichia coli
NP_492711  339 dmksnngamrdptiyrckpeeHVRTGLKYKVYPTYDFTCPIVDSVEGVTHALRTTEYHDRDDQYYFICDALGl------R 412  Caenorhabditis e...
NP_586261  352 dtdtknplmldlvgirildvvHPRKNVKYTVYPTYEFALCVSDSLEDVTHSFCTREFYTRQESYNWLLVQLEi------Y 425  Encephalitozoon ...
AAM08833   351 dmqdpnkslrdpvyyrcntdpHHRIGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRILQDMGm------R 424  Japanese rice
O13775     352 syenpnkamrdpviyrcnllpHHRTGTKYRAYPTYDFACPIVDSLEGVTHALRTTEYRDRNPLYQWMIKAMNl------R 425  fission yeast
BAC03916   347 dmksdngtlrdpvlvryfpltHMRTGDKYKAYPCYDLACPIVDSIEGVTHAMRTTEYKDRDEQYMWIQKALRl------R 420  human
Q8Y199     199 dmaapnivmrdpvlyrirhahHHRTGDAWCIYPMYDFTHCISDALENITHSLCTLEFENNRPLYDWVLDHLRdagalpaP 278  Ralstonia solana...
EAA21608   231 dmssgninlrdpilyrimnkiHPKTKNKWVIYPMYDFAHGQSDSIEKITHSICTLEFETHRPLYEWFQDKLNi------F 304  Plasmodium yoeli...
EAA22405   422 mssknkcmrdpvlyrciidipHHRHEFKYKCYPTYDFACPIIDSIEGVTHALRTNEYSDRIEQYNWFISTLEl------R 495  Plasmodium yoeli...
NP_906033  184 dmassnmhfrdpiiyriikhpHHRTGNEWNVYPMYDFAHGQSDYFEGVTHSICTLEFEVHRPLYNYFIELLRkd----sY 259  Porphyromonas gi...
Feature 1         #    ##        #                                                             
1EUQ_A     253 HPRQYEFSRLNLeytVMSKRKLnllvtdkhveGWDDPRMPTISGLRRRGYTAASIREFCKRIGvtkqdNTIEMASLESCI 332  Escherichia coli
NP_492711  413 RPHIWEYARLNMtntVMSKRKLtwfvdeghveGWDDPRLPTVRGVMRRGLTVEGLKQFIVAQGgsrsvVMMEWDKIWAFN 492  Caenorhabditis e...
NP_586261  426 KPIQWEFSRLNIsntVLSKRKLlplk--kygiELDDPRLFTIKGMRRRGFPPEAINQFCRSLGftfaeTTVDVKKLENFV 503  Encephalitozoon ...
AAM08833   425 RVEIYEFSRLNMvytLLSKRKLlwfvqnkkveDWTDPRFPTVQGIVRRGLKVEALIQFILQQGasknlNLMEWDKLWTIN 504  Japanese rice
O13775     426 KIHVWEFSRMNFvrtLLSKRKLteivdhglvwGWDDPRFPTVRGVRRRGMTIEALQQYIVSQGpskniLTLDWTSFWATN 505  fission yeast
BAC03916   421 PVHLVEFARLNFqytLMSKRKLtwmvehhevdGWDDPRFPTVKGVLRRGVQVEALRAFILSQGfskrvVTMEWDKFWSDN 500  human
Q8Y199     279 LPHQYEFARLHLtyaITSKRKLlqlvnekrvdGWDDPRMPTLVGIRRRGYTPESIQLFCERVGvskadSWIDMSILEAAV 358  Ralstonia solana...
EAA21608   305 KTRQIEFARLNVsymVMSKRKLltlvnekwvnDWDDPRMPTISGMRRRGYSPDAIKDFCNKVGvakreNMISYELLELCA 384  Plasmodium yoeli...
EAA22405   496 NVHIYEFSRLAFvktVMSKRKLkwfvennivdGWTDPRMPTIKGILRRGLTKEALFQFILEQGpskagNLMQWDKLWSIN 575  Plasmodium yoeli...
NP_906033  260 APRQIEFNRLNLtytMMSKRKLlqlvkdglvsGWDDPRMPTLCGYRRRGYTPESIRNFIDKIGytkydGIIDVALLEHAV 339  Porphyromonas gi...
Feature 1                
1EUQ_A     333 REDLNENAPR 342  Escherichia coli
NP_492711  493 KKVIDPVAPR 502  Caenorhabditis elegans
NP_586261  504 RDNLNRTSRR 513  Encephalitozoon cuniculi GB-M1
AAM08833   505 KKIIDPVCAR 514  Japanese rice
O13775     506 KKIIDPVAPR 515  fission yeast
BAC03916   501 KKILERNALR 510  human
Q8Y199     359 RDDLDARAPR 368  Ralstonia solanacearum
EAA21608   385 REDMNKKAIR 394  Plasmodium yoelii yoelii
EAA22405   576 KQIIDPNIPR 585  Plasmodium yoelii yoelii
NP_906033  340 REDLNKRATR 349  Porphyromonas gingivalis W83

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