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Report for CCDS2359.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2359.1 Public Homo sapiens 2 RAPH1 24 110 108 CCDS HistoryNCBI Gene:65059Re-query CCDS DB by CCDS ID:2359.1Re-query CCDS DB by GeneID:65059See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2359.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319170.10 ENSP00000316543.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319170.10Link to Ensembl Protein Viewer:ENSP00000316543.5Re-query CCDS DB by Nucleotide ID:ENST00000319170Re-query CCDS DB by Protein ID:ENSP00000316543
Original member Current member NCBI NM_213589.3 NP_998754.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_213589.3Link to Protein Sequence:NP_998754.1Re-query CCDS DB by Nucleotide ID:NM_213589Re-query CCDS DB by Protein ID:NP_998754Link to BLAST:NP_998754.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_998754.1 1250 Q70E73-10 1250 100% 0 0

Chromosomal Locations for CCDS 2359.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 203439437 203441413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203444868 203445010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203447959 203448079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203448738 203448836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203454430 203454540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203455437 203455580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203457530 203457595 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203459907 203460028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203461249 203461408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203461848 203461925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203489584 203490089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203491214 203491319 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 203495234 203495353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3753 nt):
ATGGAGCAGCTATCAGATGAAGAAATTGATCATGGTGCTGAAGAAGACAGTGACAAGGAAGATCAGGACC
TGGACAAAATGTTTGGAGCCTGGCTTGGAGAACTAGACAAACTCACTCAGAGTTTGGATTCTGACAAGCC
CATGGAACCAGTAAAAAGATCTCCTCTTCGCCAGGAAACAAACATGGCCAACTTTTCTTACCGCTTCTCC
ATATACAACTTGAATGAAGCTCTGAATCAGGGAGAGACTGTGGATCTGGATGCCTTGATGGCTGATCTTT
GCTCTATAGAGCAGGAGCTCAGCAGCATTGGTTCAGGAAACAGTAAGCGTCAAATCACAGAAACGAAAGC
TACTCAGAAATTGCCTGTTAGCCGACATACATTGAAACATGGCACCTTGAAAGGATTATCTTCTTCATCT
AATAGGATAGCTAAACCTTCCCATGCCAGCTACTCCTTGGACGACGTCACTGCACAGTTAGAACAGGCCT
CTTTGAGTATGGATGAGGCTGCTCAGCAATCTGTACTAGAAGATACTAAACCCTTAGTAACTAATCAGCA
CAGAAGAACCGCGTCAGCAGGCACAGTGAGTGATGCTGAAGTACACTCTATTAGTAATTCCTCCCATTCC
AGCATCACTTCCGCAGCCTCCAGCATGGACTCTTTGGATATTGATAAAGTAACACGCCCTCAAGAGCTGG
ATTTGACACATCAAGGGCAGCCAATTACTGAGGAAGAACAGGCAGCAAAATTGAAAGCTGAGAAGATCAG
AGTTGCCCTAGAGAAAATTAAAGAGGCACAAGTGAAAAAGCTGGTGATCAGAGTCCACATGTCTGATGAC
AGTTCTAAAACAATGATGGTGGATGAGAGGCAGACAGTAAGACAAGTACTGGATAACCTGATGGACAAAT
CCCACTGCGGTTATAGTTTAGACTGGTCACTGGTAGAAACCGTTTCTGAATTACAAATGGAGAGAATCTT
TGAAGACCATGAAAACTTGGTTGAAAATCTTCTTAATTGGACAAGAGATAGCCAAAACAAGCTTATATTT
ATGGAGCGTATAGAAAAATATGCACTTTTCAAAAACCCACAGAATTATCTTTTGGGGAAAAAAGAAACAG
CTGAGATGGCAGATAGAAACAAAGAAGTCCTCTTGGAGGAATGTTTTTGTGGAAGTTCTGTAACTGTACC
AGAAATTGAAGGAGTCCTTTGGTTGAAGGATGATGGCAAGAAGTCCTGGAAAAAGCGTTATTTTCTCTTG
CGAGCATCTGGTATCTACTATGTTCCCAAAGGAAAAGCAAAGGTCTCTCGGGATCTGGTGTGCTTTCTCC
AGCTGGATCATGTCAACGTTTATTATGGCCAGGACTATCGGAACAAATACAAAGCACCTACAGACTATTG
TCTGGTGCTGAAGCATCCACAAATCCAGAAGAAATCTCAATATATCAAATACCTTTGTTGTGATGATGTG
AGGACACTGCATCAGTGGGTCAATGGGATCCGCATTGCAAAGTATGGGAAGCAGCTCTATATGAACTACC
AAGAAGCCTTGAAGAGGACAGAGTCAGCCTATGATTGGACTTCCTTATCCAGCTCCAGCATTAAATCGGG
ATCCAGTTCTTCCAGCATCCCAGAGTCTCAGTCAAACCACTCCAATCAGTCTGATAGCGGAGTTTCTGAC
ACCCAGCCAGCAGGACACGTCCGTTCCCAGAGCATTGTGAGCTCCGTATTCTCTGAAGCCTGGAAACGAG
GCACTCAGTTGGAAGAGTCCAGCAAGGCCAGAATGGAGTCTATGAATCGGCCCTACACTTCACTTGTGCC
CCCTTTATCCCCGCAACCTAAGATAGTCACCCCCTACACTGCTTCACAGCCTTCACCACCTCTACCTCCT
CCGCCACCCCCACCTCCTCCTCCACCACCCCCTCCACCACCCCCTCCTCCCCCACTCCCCAGCCAGTCTG
CACCTTCTGCAGGCTCAGCAGCCCCAATGTTCGTCAAGTACAGCACAATAACACGGCTACAGAATGCGTC
TCAGCATTCAGGGGCCCTGTTTAAGCCGCCAACACCCCCAGTGATGCAGTCACAGTCAGTGAAGCCTCAG
ATCCTGGTACCCCCCAATGGAGTTGTTCCACCACCCCCTCCCCCTCCTCCACCCCCAACCCCAGGCTCTG
CCATGGCCCAGCTAAAGCCTGCACCGTGTGCCCCATCCCTTCCACAGTTCAGTGCCCCGCCTCCTCCACT
GAAGATCCATCAAGTTCAGCATATTACTCAGGTGGCTCCCCCAACACCCCCCCCACCTCCTCCTATCCCT
GCACCCCTCCCTCCCCAAGCTCCCCCAAAACCCCTTGTGACCATCCCCGCACCAACCAGCACCAAGACTG
TGGCACCTGTTGTGACTCAAGCTGCACCACCCACACCTACTCCTCCAGTGCCCCCAGCAAAAAAGCAGCC
AGCTTTCCCTGCTTCTTACATTCCACCCTCTCCCCCTACCCCTCCTGTTCCAGTACCCCCGCCAACATTA
CCCAAGCAACAGAGCTTCTGTGCAAAACCCCCTCCCTCTCCACTGTCACCGGTGCCCTCGGTCGTGAAGC
AGATAGCCAGCCAGTTTCCACCCCCTCCAACTCCCCCTGCCATGGAATCTCAGCCCTTAAAGCCTGTCCC
AGCAAATGTAGCTCCACAGTCCCCTCCTGCAGTAAAAGCAAAGCCCAAGTGGCAGCCCAGCTCCATCCCA
GTCCCTTCTCCGGACTTCCCTCCTCCCCCTCCTGAAAGCAGCCTGGTGTTTCCTCCTCCACCCCCATCAC
CTGTCCCAGCCCCACCACCACCACCTCCACCCACAGCTTCTCCTACCCCTGACAAAAGTGGATCTCCAGG
CAAAAAGACCAGTAAGACGTCCAGCCCTGGGGGAAAGAAACCACCCCCAACCCCACAGCGCAACTCCAGC
ATTAAATCCAGCAGTGGTGCAGAGCACCCCGAGCCCAAGAGACCCTCGGTGGACAGTCTAGTCAGCAAGT
TTACACCGCCAGCAGAATCAGGGTCTCCCAGCAAGGAGACCCTACCACCTCCTGCAGCACCCCCCAAGCC
TGGAAAACTCAATCTTTCTGGAGTCAACCTTCCTGGAGTTCTCCAACAAGGGTGTGTGTCAGCAAAAGCC
CCTGTTCTGAGTGGGCGTGGAAAGGACTCCGTGGTGGAATTTCCTTCTCCTCCATCCGATTCTGATTTTC
CACCCCCTCCACCTGAAACAGAGCTTCCTCTGCCCCCCATTGAGATTCCAGCAGTTTTCTCGGGAAACAC
CTCTCCAAAAGTGGCAGTCGTTAATCCTCAACCACAACAATGGTCTAAAATGTCAGTGAAGAAGGCCCCT
CCACCCACACGACCCAAACGGAATGATAGCACCCGCCTCACTCAAGCTGAGATTTCTGAGCAGCCAACAA
TGGCCACAGTTGTGCCACAAGTGCCCACCTCTCCCAAATCCAGCCTTAGTGTCCAGCCTGGATTCCTGGC
TGACCTCAACAGGACACTGCAACGAAAGTCCATCACTCGGCACGGCTCACTCTCCTCCCGCATGTCCAGA
GCAGAACCAACAGCCACCATGGATGATATGGCATTGCCTCCACCACCCCCTGAACTGCTGTCTGATCAAC
AGAAGGCTGGTTACGGAGGCAGTCATATATCAGGCTATGCAACGTTGCGGAGAGGACCCCCTCCTGCTCC
CCCCAAAAGAGACCAGAACACCAAGCTCTCCAGAGACTGGTAG

Translation (1250 aa):
MEQLSDEEIDHGAEEDSDKEDQDLDKMFGAWLGELDKLTQSLDSDKPMEPVKRSPLRQETNMANFSYRFS
IYNLNEALNQGETVDLDALMADLCSIEQELSSIGSGNSKRQITETKATQKLPVSRHTLKHGTLKGLSSSS
NRIAKPSHASYSLDDVTAQLEQASLSMDEAAQQSVLEDTKPLVTNQHRRTASAGTVSDAEVHSISNSSHS
SITSAASSMDSLDIDKVTRPQELDLTHQGQPITEEEQAAKLKAEKIRVALEKIKEAQVKKLVIRVHMSDD
SSKTMMVDERQTVRQVLDNLMDKSHCGYSLDWSLVETVSELQMERIFEDHENLVENLLNWTRDSQNKLIF
MERIEKYALFKNPQNYLLGKKETAEMADRNKEVLLEECFCGSSVTVPEIEGVLWLKDDGKKSWKKRYFLL
RASGIYYVPKGKAKVSRDLVCFLQLDHVNVYYGQDYRNKYKAPTDYCLVLKHPQIQKKSQYIKYLCCDDV
RTLHQWVNGIRIAKYGKQLYMNYQEALKRTESAYDWTSLSSSSIKSGSSSSSIPESQSNHSNQSDSGVSD
TQPAGHVRSQSIVSSVFSEAWKRGTQLEESSKARMESMNRPYTSLVPPLSPQPKIVTPYTASQPSPPLPP
PPPPPPPPPPPPPPPPPPLPSQSAPSAGSAAPMFVKYSTITRLQNASQHSGALFKPPTPPVMQSQSVKPQ
ILVPPNGVVPPPPPPPPPPTPGSAMAQLKPAPCAPSLPQFSAPPPPLKIHQVQHITQVAPPTPPPPPPIP
APLPPQAPPKPLVTIPAPTSTKTVAPVVTQAAPPTPTPPVPPAKKQPAFPASYIPPSPPTPPVPVPPPTL
PKQQSFCAKPPPSPLSPVPSVVKQIASQFPPPPTPPAMESQPLKPVPANVAPQSPPAVKAKPKWQPSSIP
VPSPDFPPPPPESSLVFPPPPPSPVPAPPPPPPPTASPTPDKSGSPGKKTSKTSSPGGKKPPPTPQRNSS
IKSSSGAEHPEPKRPSVDSLVSKFTPPAESGSPSKETLPPPAAPPKPGKLNLSGVNLPGVLQQGCVSAKA
PVLSGRGKDSVVEFPSPPSDSDFPPPPPETELPLPPIEIPAVFSGNTSPKVAVVNPQPQQWSKMSVKKAP
PPTRPKRNDSTRLTQAEISEQPTMATVVPQVPTSPKSSLSVQPGFLADLNRTLQRKSITRHGSLSSRMSR
AEPTATMDDMALPPPPPELLSDQQKAGYGGSHISGYATLRRGPPPAPPKRDQNTKLSRDW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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