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Report for CCDS9862.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9862.1 Public Homo sapiens 14 VIPAS39 24 110 108 CCDS HistoryNCBI Gene:63894Re-query CCDS DB by CCDS ID:9862.1Re-query CCDS DB by GeneID:63894See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 9862.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000343765.6 ENSP00000339122.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000343765.6Link to Ensembl Protein Viewer:ENSP00000339122.2Re-query CCDS DB by Nucleotide ID:ENST00000343765Re-query CCDS DB by Protein ID:ENSP00000339122
Original member Current member EBI ENST00000553888.5 ENSP00000452181.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000553888.5Link to Ensembl Protein Viewer:ENSP00000452181.1Re-query CCDS DB by Nucleotide ID:ENST00000553888Re-query CCDS DB by Protein ID:ENSP00000452181
Original member Current member EBI ENST00000557658.6 ENSP00000452191.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000557658.6Link to Ensembl Protein Viewer:ENSP00000452191.1Re-query CCDS DB by Nucleotide ID:ENST00000557658Re-query CCDS DB by Protein ID:ENSP00000452191
Original member Current member NCBI NM_001193314.2 NP_001180243.1 Accepted alive Link to Nucleotide Sequence:NM_001193314.2Link to Protein Sequence:NP_001180243.1Re-query CCDS DB by Nucleotide ID:NM_001193314Re-query CCDS DB by Protein ID:NP_001180243Link to BLAST:NP_001180243.1
Original member Current member NCBI NM_001193315.2 NP_001180244.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193315.2Link to Protein Sequence:NP_001180244.1Re-query CCDS DB by Nucleotide ID:NM_001193315Re-query CCDS DB by Protein ID:NP_001180244Link to BLAST:NP_001180244.1
Original member Current member NCBI NM_001193317.2 NP_001180246.1 Accepted alive Link to Nucleotide Sequence:NM_001193317.2Link to Protein Sequence:NP_001180246.1Re-query CCDS DB by Nucleotide ID:NM_001193317Re-query CCDS DB by Protein ID:NP_001180246Link to BLAST:NP_001180246.1
Original member Current member NCBI NM_001400326.1 NP_001387255.1 Accepted alive Link to Nucleotide Sequence:NM_001400326.1Link to Protein Sequence:NP_001387255.1Re-query CCDS DB by Nucleotide ID:NM_001400326Re-query CCDS DB by Protein ID:NP_001387255Link to BLAST:NP_001387255.1
Original member Current member NCBI NM_022067.4 NP_071350.2 Accepted alive Link to Nucleotide Sequence:NM_022067.4Link to Protein Sequence:NP_071350.2Re-query CCDS DB by Nucleotide ID:NM_022067Re-query CCDS DB by Protein ID:NP_071350Link to BLAST:NP_071350.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180243.1 493 Q9H9C1-1 493 100% 0 0
NP_001180244.1 493 Q9H9C1-1 493 100% 0 0
NP_001180246.1 493 Q9H9C1-1 493 100% 0 0
NP_001387255.1 493 Q9H9C1-1 493 100% 0 0
NP_071350.2 493 Q9H9C1-1 493 100% 0 0

Chromosomal Locations for CCDS 9862.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 77427616 77427636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77428370 77428474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77429006 77429095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77429681 77429767 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77433842 77433931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77434262 77434303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77435259 77435393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77435844 77435919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77437808 77437881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77441066 77441093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77442560 77442662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77443119 77443152 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77444249 77444341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77448494 77448550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77449293 77449357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77449714 77449752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77451187 77451333 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77453299 77453401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 77454010 77454102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1482 nt):
ATGAATCGGACAAAGGGTGATGAGGAGGAGTATTGGAACAGCTCCAAGTTCAAGGCTTTTACCTTTGACG
ATGAAGACGATGAGCTTTCACAGTTAAAGGAGTCCAAGCGGGCGGTGAACAGCCTCCGAGACTTCGTGGA
TGATGATGACGATGATGACCTGGAGCGAGTCAGCTGGAGTGGGGAACCTGTGGGAAGTATCTCATGGTCC
ATCAGAGAGACTGCTGGTAATAGCGGCTCAACCCACGAGGGGCGTGAACAGCTAAAGAGCCGAAACAGCT
TCTCCTCCTATGCACAACTACCCAAGCCTACTTCTACCTACTCCCTGAGCAGCTTTTTTAGAGGTAGAAC
TAGACCTGGAAGTTTCCAGTCCCTTTCTGATGCTCTGTCAGACACACCTGCCAAAAGCTATGCTCCAGAG
CTGGGGAGACCCAAAGGGGAGTATAGGGATTACAGCAATGACTGGAGCCCCAGTGATACAGTGCGACGTC
TCCGGAAGGGCAAGGTTTGCTCACTAGAGAGATTCCGCTCCTTACAGGACAAACTACAACTCCTAGAAGA
GGCAGTAAGCATGCATGATGGAAACGTCATTACTGCAGTTCTGATTTTCCTGAAGAGGACACTGAGCAAA
GAGATCCTCTTCCGAGAGCTGGAGGTGCGACAGGTTGCCCTGAGACATCTTATTCACTTCCTTAAGGAAA
TAGGGGATCAAAAGTTGCTTTTAGACCTCTTCAGGTTCCTAGATAGAACAGAAGAGCTTGCGCTATCTCA
TTATCGAGAGCATTTGAACATTCAGGACCCTGACAAACGAAAAGAATTTCTTAAAACCTGTGTTGGTTTG
CCATTTTCAGCAGAAGATTCCGCACACATACAGGACCATTACACGCTCCTGGAACGTCAGATCATTATTG
AGGCAAATGATCGCCATCTAGAATCAGCAGGACAGACTGAGATCTTCCGAAAGCACCCCCGCAAAGCCTC
CATCCTCAACATGCCACTAGTGACAACACTTTTCTACTCCTGCTTCTATCACTACACAGAGGCTGAGGGG
ACATTCAGCAGTCCCGTCAACCTGAAGAAGACATTTAAGATCCCAGATAAACAGTATGTGCTGACAGCCC
TGGCTGCTCGTGCCAAGCTTCGAGCCTGGAATGATGTAGATGCCCTATTCACCACAAAGAACTGGCTGGG
CTATACCAAGAAGAGAGCACCCATTGGCTTCCATCGGGTTGTCGAAATTTTGCACAAGAACAATGCCCCT
GTGCAGATATTACAGGAGTATGTCAATCTGGTGGAAGATGTGGACACGAAGTTGAACTTAGCCACTAAGT
TCAAGTGCCATGATGTCGTCATTGATACCTACCGGGACCTGAAGGATCGTCAACAGTTGCTAGCATACAG
GAGTAAGGTAGATAAAGGATCAGCAGAGGAGGAGAAGATTGATGCTCTTCTCAGCAGCTCGCAAATTCGA
TGGAAGAATTAA

Translation (493 aa):
MNRTKGDEEEYWNSSKFKAFTFDDEDDELSQLKESKRAVNSLRDFVDDDDDDDLERVSWSGEPVGSISWS
IRETAGNSGSTHEGREQLKSRNSFSSYAQLPKPTSTYSLSSFFRGRTRPGSFQSLSDALSDTPAKSYAPE
LGRPKGEYRDYSNDWSPSDTVRRLRKGKVCSLERFRSLQDKLQLLEEAVSMHDGNVITAVLIFLKRTLSK
EILFRELEVRQVALRHLIHFLKEIGDQKLLLDLFRFLDRTEELALSHYREHLNIQDPDKRKEFLKTCVGL
PFSAEDSAHIQDHYTLLERQIIIEANDRHLESAGQTEIFRKHPRKASILNMPLVTTLFYSCFYHYTEAEG
TFSSPVNLKKTFKIPDKQYVLTALAARAKLRAWNDVDALFTTKNWLGYTKKRAPIGFHRVVEILHKNNAP
VQILQEYVNLVEDVDTKLNLATKFKCHDVVIDTYRDLKDRQQLLAYRSKVDKGSAEEEKIDALLSSSQIR
WKN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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