NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS11415.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11415.1 Public Homo sapiens 17 NKIRAS2 24 110 108 CCDS HistoryNCBI Gene:28511Re-query CCDS DB by CCDS ID:11415.1Re-query CCDS DB by GeneID:28511See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11415.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307641.9 ENSP00000303580.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000307641.9Link to Ensembl Protein Viewer:ENSP00000303580.5Re-query CCDS DB by Nucleotide ID:ENST00000307641Re-query CCDS DB by Protein ID:ENSP00000303580
Original member Current member EBI ENST00000393880.5 ENSP00000377458.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393880.5Link to Ensembl Protein Viewer:ENSP00000377458.1Re-query CCDS DB by Nucleotide ID:ENST00000393880Re-query CCDS DB by Protein ID:ENSP00000377458
Original member Current member EBI ENST00000393881.7 ENSP00000377459.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393881.7Link to Ensembl Protein Viewer:ENSP00000377459.3Re-query CCDS DB by Nucleotide ID:ENST00000393881Re-query CCDS DB by Protein ID:ENSP00000377459
Original member Current member EBI ENST00000393885.9 ENSP00000377463.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000393885.9Link to Ensembl Protein Viewer:ENSP00000377463.3Re-query CCDS DB by Nucleotide ID:ENST00000393885Re-query CCDS DB by Protein ID:ENSP00000377463
Original member Current member NCBI NM_001001349.2 NP_001001349.1 Accepted alive Link to Nucleotide Sequence:NM_001001349.2Link to Protein Sequence:NP_001001349.1Re-query CCDS DB by Nucleotide ID:NM_001001349Re-query CCDS DB by Protein ID:NP_001001349Link to BLAST:NP_001001349.1
Original member Current member NCBI NM_001144927.2 NP_001138399.1 Accepted alive Link to Nucleotide Sequence:NM_001144927.2Link to Protein Sequence:NP_001138399.1Re-query CCDS DB by Nucleotide ID:NM_001144927Re-query CCDS DB by Protein ID:NP_001138399Link to BLAST:NP_001138399.1
Original member Current member NCBI NM_017595.6 NP_060065.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017595.6Link to Protein Sequence:NP_060065.2Re-query CCDS DB by Nucleotide ID:NM_017595Re-query CCDS DB by Protein ID:NP_060065Link to BLAST:NP_060065.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001349.1 191 Q9NYR9-1 191 100% 0 0
NP_001138399.1 191 Q9NYR9-1 191 100% 0 0
NP_060065.2 191 Q9NYR9-1 191 100% 0 0

Chromosomal Locations for CCDS 11415.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 42021578 42021671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42022399 42022640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 42023654 42023893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGGGGAAGAGCTGCAAGGTGGTCGTGTGTGGCCAGGCGTCTGTGGGCAAAACTTCAATCCTGGAGCAGC
TTCTGTATGGGAACCATGTAGTGGGTTCGGAGATGATCGAGACGCAGGAGGACATCTACGTGGGCTCCAT
TGAGACAGACCGGGGGGTGCGAGAGCAGGTGCGTTTCTATGACACCCGGGGGCTCCGAGATGGGGCCGAA
CTGCCCCGACACTGCTTCTCTTGCACTGATGGCTACGTCCTGGTCTATAGCACAGATAGCAGAGAGTCTT
TTCAGCGTGTGGAGCTGCTCAAGAAGGAGATTGACAAATCCAAGGACAAGAAGGAGGTCACCATCGTGGT
CCTTGGCAACAAGTGTGACTTACAGGAGCAGCGGCGTGTAGACCCAGATGTGGCTCAGCACTGGGCCAAG
TCAGAGAAGGTGAAGCTGTGGGAGGTGTCAGTGGCGGACCGGCGCTCCCTCCTGGAGCCCTTTGTCTACT
TGGCCAGCAAGATGACGCAACCCCAGAGCAAGTCTGCCTTCCCCCTCAGCCGGAAGAACAAGGGCAGCGG
CTCCTTGGATGGCTGA

Translation (191 aa):
MGKSCKVVVCGQASVGKTSILEQLLYGNHVVGSEMIETQEDIYVGSIETDRGVREQVRFYDTRGLRDGAE
LPRHCFSCTDGYVLVYSTDSRESFQRVELLKKEIDKSKDKKEVTIVVLGNKCDLQEQRRVDPDVAQHWAK
SEKVKLWEVSVADRRSLLEPFVYLASKMTQPQSKSAFPLSRKNKGSGSLDG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH