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Report for CCDS91677.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91677.1 Public Homo sapiens 12 CAPRIN2 24 110 108 CCDS HistoryNCBI Gene:65981Re-query CCDS DB by CCDS ID:91677.1Re-query CCDS DB by GeneID:65981See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91677.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000542550.6 ENSP00000443353.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000542550.6Link to Ensembl Protein Viewer:ENSP00000443353.2Re-query CCDS DB by Nucleotide ID:ENST00000542550Re-query CCDS DB by Protein ID:ENSP00000443353
Original member Current member EBI ENST00000695402.1 ENSP00000511883.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000695402.1Link to Ensembl Protein Viewer:ENSP00000511883.1Re-query CCDS DB by Nucleotide ID:ENST00000695402Re-query CCDS DB by Protein ID:ENSP00000511883
Original member Current member NCBI NM_001385502.1 NP_001372431.1 Accepted alive Link to Nucleotide Sequence:NM_001385502.1Link to Protein Sequence:NP_001372431.1Re-query CCDS DB by Nucleotide ID:NM_001385502Re-query CCDS DB by Protein ID:NP_001372431Link to BLAST:NP_001372431.1
Original member Current member NCBI NM_001385503.1 NP_001372432.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001385503.1Link to Protein Sequence:NP_001372432.1Re-query CCDS DB by Nucleotide ID:NM_001385503Re-query CCDS DB by Protein ID:NP_001372432Link to BLAST:NP_001372432.1

Chromosomal Locations for CCDS 91677.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 30709902 30710470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30711566 30711629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30713785 30713885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30714959 30715141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30716508 30716676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30719079 30719225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30720811 30720915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30723259 30723314 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30724370 30724451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30725966 30726088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30728648 30729325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30730239 30730282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30731343 30731510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30733629 30733711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30734968 30735206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30741020 30741106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30751071 30751133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 30753344 30753520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3138 nt):
ATGAAGTCAGCCAAGCCCCAAGTGAACCACAGTCAGCATGGGGAAAGCCAGCGGGCCTTGAGCCCCCTGC
AGTCTACTCTGAGTTCTGCTGCATCTCCTTCCCAAGCGTATGAGACCTATATTGAAAATGGACTCATATG
CCTTAAACACAAAATTAGAAACATCGAGAAAAAGAAGCTCAAACTGGAGGATTATAAGGATCGCCTGAAA
AGTGGAGAGCATCTTAATCCAGACCAGTTGGAAGCTGTAGAGAAATATGAAGAAGTGCTACATAATTTGG
AATTTGCCAAGGAGCTTCAAAAAACCTTTTCTGGGTTGAGCCTAGATCTACTAAAAGCGCAAAAGAAGGC
CCAGAGAAGGGAGCACATGCTAAAACTTGAGGCTGAGAAGAAAAAGCTTCGAACTATACTTCAAGTTCAG
TATGTATTGCAGAACTTGACACAGGAGCACGTACAAAAAGACTTCAAAGGGGGTTTGAATGGTGCAGTGT
ATTTGCCTTCAAAAGAACTTGACTACCTCATTAAGTTTTCAAAACTGACCTGCCCTGAAAGAAATGAAAG
TCTGAGTGTTGAAGACCAGATGGAGCAGTCATCCTTGTACTTTTGGGACCTTTTGGAAGGTAGTGAGAAA
GCAGTGGTAGGAACGACATACAAACACTTGAAGGATCTACTGTCTAAATTGCTGAACTCAGGCTATTTTG
AAAGTATCCCAGTTCCCAAAAATGCCAAGGAAAAGGAAGTACCACTGGAGGAAGAAATGCTAATACAATC
AGAGAAAAAAACACAATTATCGAAGACTGAATCTGTCAAAGAGTCAGAGTCTCTAATGGAATTTGCCCAG
CCAGAGATACAACCACAAGAGTTTCTTAACAGACGCTATATGACAGAAGTAGATTATTCAAACAAACAAG
GCGAAGAGCAACCTTGGGAAGCAGATTATGCTAGAAAACCAAATCTCCCAAAACGTTGGGATATGCTTAC
TGAACCAGATGGTCAAGAGAAGAAACAGGAGTCCTTTAAGTCCTGGGAGGCTTCTGGTAAGCACCAGGAG
GTATCCAAGCCTGCAGTTTCCTTAGAACAGAGGAAACAAGACACCTCAAAACTCAGGTCTACTCTGCCGG
AAGAGCAGAAGAAGCAGGAGATCTCCAAATCCAAGCCATCTCCTAGCCAGTGGAAGCAAGATACACCTAA
ATCCAAAGCAGGGTATGTTCAAGAGGAACAAAAGAAACAGGAGACACCAAAGCTGTGGCCAGTTCAGCTG
CAGAAAGAACAAGATCCAAAGAAGCAAACTCCAAAGTCTTGGACACCTTCCATGCAGAGCGAACAGAACA
CCACCAAGTCATGGACCACTCCCATGTGTGAAGAACAGGATTCAAAACAGCCAGAGACTCCAAAATCCTG
GGAAAACAATGTTGAGAGTCAAAAACACTCTTTAACATCACAGTCACAGATTTCTCCAAAGTCCTGGGGA
GTAGCTACAGCAAGCCTCATACCAAATGACCAGCTGCTGCCCAGGAAGTTGAACACAGAACCCAAAGATG
TGCCTAAGCCTGTGCATCAGCCTGTAGGTTCTTCCTCTACCCTTCCGAAGGATCCAGTATTGAGGAAAGA
AAAACTGCAGGATCTGATGACTCAGATTCAAGGAACTTGTAACTTTATGCAAGAGTCTGTTCTTGACTTT
GACAAACCTTCAAGTGCAATTCCAACGTCACAACCGCCTTCAGCTACTCCAGGTAGCCCCGTAGCATCTA
AAGAACAAAATCTGTCCAGTCAAAGTGATTTTCTTCAAGAGCCGTTACAGGCTACTTCTTCTCCAGTTAC
TTGTAGCTCAAATGCTTGCTTGGTTACTACCGATCAGGCTTCTTCTGGATCTGAAACAGAGTTTATGACC
TCAGAGACTCCTGAGGCAGCAATTCCCCCAGGCAAGCAACCGTCTTCACTAGCTTCTCCAAATCCTCCCA
TGGCAAAGGGCTCTGAACAGGGCTTCCAGTCACCTCCAGCAAGTAGTAGTTCAGTAACCATTAACACAGC
ACCCTTTCAAGCCATGCAGACAGTATTTAACGTTAATGCACCTCTGCCTCCACGAAAAGAACAAGAAATA
AAAGAATCCCCTTATTCACCTGGCTACAATCAAAGTTTTACCACAGCAAGTACACAAACACCACCCCAGT
GCCAACTGCCATCTATACATGTAGAACAAACTGTCCATTCTCAAGAGACTGCAAATTATCATCCTGATGG
AACTATTCAAGTAAGCAATGGTAGCCTTGCCTTTTACCCAGCACAGACGAATGTGTTTCCCAGACCTACT
CAGCCATTTGTCAATAGCCGGGGATCTGTTAGAGGATGTACTCGTGGTGGGAGATTAATAACCAATTCCT
ATCGGTCCCCTGGTGGTTATAAAGGTTTTGATACTTATAGAGGACTCCCTTCAATTTCCAATGGAAATTA
TAGCCAGCTGCAGTTCCAAGCTAGAGAGTATTCTGGAGCACCTTATTCCCAAAGGGATAATTTCCAGCAG
TGTTATAAGCGAGGAGGGACATCTGGTGGTCCACGAGCAAATTCGAGAGCAGGGTGGAGTGATTCTTCTC
AGGTGAGCAGCCCAGAAAGAGACAACGAAACCTTTAACAGTGGTGACTCTGGACAAGGAGACTCCCGTAG
CATGACCCCTGTGGATGTGCCAGTGACAAATCCAGCAGCCACCATACTGCCAGTACACGTCTACCCTCTG
CCTCAGCAGATGCGAGTTGCCTTCTCAGCAGCCAGAACCTCTAATCTGGCCCCTGGAACTTTAGACCAAC
CTATTGTGTTTGATCTTCTTCTGAACAACTTAGGAGAAACTTTTGATCTTCAGCTTGGTAGATTTAATTG
CCCAGTGAATGGCACTTACGTTTTCATTTTTCACATGCTAAAGCTGGCAGTGAATGTGCCACTGTATGTC
AACCTCATGAAGAATGAAGAGGTCTTGGTATCAGCCTATGCCAATGATGGTGCTCCAGACCATGAAACTG
CTAGCAATCATGCAATTCTTCAGCTCTTCCAGGGAGACCAGATATGGTTACGTCTGCACAGGGGAGCAAT
TTATGGAAGTAGCTGGAAATATTCTACGTTTTCAGGCTATCTTCTTTATCAAGATTGA

Translation (1045 aa):
MKSAKPQVNHSQHGESQRALSPLQSTLSSAASPSQAYETYIENGLICLKHKIRNIEKKKLKLEDYKDRLK
SGEHLNPDQLEAVEKYEEVLHNLEFAKELQKTFSGLSLDLLKAQKKAQRREHMLKLEAEKKKLRTILQVQ
YVLQNLTQEHVQKDFKGGLNGAVYLPSKELDYLIKFSKLTCPERNESLSVEDQMEQSSLYFWDLLEGSEK
AVVGTTYKHLKDLLSKLLNSGYFESIPVPKNAKEKEVPLEEEMLIQSEKKTQLSKTESVKESESLMEFAQ
PEIQPQEFLNRRYMTEVDYSNKQGEEQPWEADYARKPNLPKRWDMLTEPDGQEKKQESFKSWEASGKHQE
VSKPAVSLEQRKQDTSKLRSTLPEEQKKQEISKSKPSPSQWKQDTPKSKAGYVQEEQKKQETPKLWPVQL
QKEQDPKKQTPKSWTPSMQSEQNTTKSWTTPMCEEQDSKQPETPKSWENNVESQKHSLTSQSQISPKSWG
VATASLIPNDQLLPRKLNTEPKDVPKPVHQPVGSSSTLPKDPVLRKEKLQDLMTQIQGTCNFMQESVLDF
DKPSSAIPTSQPPSATPGSPVASKEQNLSSQSDFLQEPLQATSSPVTCSSNACLVTTDQASSGSETEFMT
SETPEAAIPPGKQPSSLASPNPPMAKGSEQGFQSPPASSSSVTINTAPFQAMQTVFNVNAPLPPRKEQEI
KESPYSPGYNQSFTTASTQTPPQCQLPSIHVEQTVHSQETANYHPDGTIQVSNGSLAFYPAQTNVFPRPT
QPFVNSRGSVRGCTRGGRLITNSYRSPGGYKGFDTYRGLPSISNGNYSQLQFQAREYSGAPYSQRDNFQQ
CYKRGGTSGGPRANSRAGWSDSSQVSSPERDNETFNSGDSGQGDSRSMTPVDVPVTNPAATILPVHVYPL
PQQMRVAFSAARTSNLAPGTLDQPIVFDLLLNNLGETFDLQLGRFNCPVNGTYVFIFHMLKLAVNVPLYV
NLMKNEEVLVSAYANDGAPDHETASNHAILQLFQGDQIWLRLHRGAIYGSSWKYSTFSGYLLYQD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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