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Report for CCDS6672.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6672.1 Public Homo sapiens 9 AGTPBP1 24 110 108 CCDS HistoryNCBI Gene:23287Re-query CCDS DB by CCDS ID:6672.1Re-query CCDS DB by GeneID:23287See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6672.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000376083.7 ENSP00000365251.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000376083.7Link to Ensembl Protein Viewer:ENSP00000365251.3Re-query CCDS DB by Nucleotide ID:ENST00000376083Re-query CCDS DB by Protein ID:ENSP00000365251
Original member Current member NCBI NM_015239.3 NP_056054.2 Accepted alive Link to Nucleotide Sequence:NM_015239.3Link to Protein Sequence:NP_056054.2Re-query CCDS DB by Nucleotide ID:NM_015239Re-query CCDS DB by Protein ID:NP_056054Link to BLAST:NP_056054.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056054.2 1186 Q9UPW5-2 1186 100% 0 0

Chromosomal Locations for CCDS 6672.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 85547109 85547286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85575315 85575475 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85578920 85579096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85585463 85585594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85586831 85586960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85588298 85588478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85589528 85589681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85592560 85592704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85596362 85596449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85618983 85619131 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85619215 85619301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85621202 85621285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85632662 85633374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85642827 85642943 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85646321 85646418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85655143 85655200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85657435 85657643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85660936 85660973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85669485 85669578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85672550 85672681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85677436 85677582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85678335 85678398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85681268 85681335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85692689 85692813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 85712502 85712533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3561 nt):
ATGAGCAAGTTAAAAGTGATACCAGAAAAAAGCCTTACCAATAATTCTAGGATCGTAGGACTCCTGGCTC
AACTGGAGAAGATCAATGCTGAGCCTTCAGAATCAGACACTGCCCGATATGTTACATCAAAAATTCTTCA
TCTGGCTCAGAGTCAAGAAAAAACAAGGAGAGAAATGACAGCCAAAGGTTCTACAGGAATGGAAATTCTG
CTGTCAACATTAGAGAACACAAAAGATCTTCAAACTACACTTAATATCTTAAGCATTCTTGTTGAGCTGG
TGTCAGCTGGTGGAGGTCGAAGAGTGAGTTTCTTAGTCACCAAAGGTGGTTCACAAATATTGTTGCAGTT
ACTTATGAATGCCAGCAAAGAATCTCCCCCACATGAGGACTTAATGGTACAGATTCATTCTATTCTTGCA
AAGATTGGACCAAAAGATAAAAAATTTGGAGTAAAGGCTAGAATTAATGGGGCTCTGAATATAACCCTGA
ATTTGGTCAAGCAGAATTTGCAGAATCATCGCTTGGTTCTACCTTGCCTTCAGCTTTTACGAGTATATTC
TGCCAACTCTGTGAATTCAGTATCCTTAGGGAAAAATGGAGTTGTGGAACTGATGTTTAAAATCATTGGA
CCATTTAGTAAGAAGAATTCCAGTCTTATAAAGGTTGCTTTAGACACTCTTGCTGCATTGCTAAAATCAA
AAACAAATGCCAGGAGAGCTGTAGACAGAGGATATGTCCAAGTGCTTTTAACAATTTATGTAGATTGGCA
CCGCCATGATAACCGGCATAGAAACATGCTCATTCGGAAAGGAATTTTACAGAGTTTAAAAAGTGTTACA
AACATCAAGTTGGGAAGAAAAGCATTTATTGATGCCAATGGGATGAAAATTCTGTATAATACTTCGCAAT
TGCCTGTTATTCCTGTGACTGGTCCTGTGGCTCAGCTCTACAGCTTACCTCCTGAAGTGGATGACGTAGT
AGATGAAAGTGATGACAACGATGATATTGATGTAGAAGCTGAAAACGAAACTGAGAATGAAGATGACCTA
GATCAAAATTTTAAGAATGATGATATTGAAACAGATATTAACAAACTAAAACCCCAGCAAGAACCGGGAC
GAACAATAGAAGATCTAAAAATGTATGAACACCTTTTCCCTGAGCTTGTTGATGATTTTCAGGACTATGA
TTTAATCTCCAAAGAACCAAAGCCTTTTGTATTTGAGGGAAAAGTACGTGGTCCTATTGTTGTTCCTACG
GCAGGCGAGGAAACATCTGGGAATTCTGGCAATTTAAGAAAAGTTGTAATGAAGGAGAACATATCTTCTA
AAGGAGATGAAGGTGAAAAGAAGTCTACCTTTATGGATCTAGCAAAAGAAGATATTAAAGATAATGATAG
AACATTACAACAGCAGCCAGGTGATCAAAATAGAACTATTTCATCAGTCCATGGTTTAAACAATGATATT
GTAAAGGCCTTGGACCGAATTACATTGCAGAATATTCCTTCTCAAACAGCCCCAGGTTTTACTGCAGAAA
TGAAGAAGGACTGCAGTCTTCCTCTTACTGTCCTTACCTGTGCTAAAGCATGTCCACACATGGCTACTTG
TGGAAATGTTCTGTTTGAGGGAAGAACAGTTCAGCTAGGGAAGCTTTGCTGCACTGGAGTTGAAACTGAA
GATGATGAAGATACTGAGTCAAATTCATCGGTAGAACAAGCATCGGTTGAAGTACCTGATGGACCAACAC
TCCATGACCCAGACCTCTATATTGAGATTGTGAAAAATACGAAGTCTGTCCCAGAATATTCAGAGGTGGC
TTATCCCGATTATTTTGGTCACATTCCGCCTCCATTCAAAGAGCCTATTTTAGAAAGGCCTTATGGTGTA
CAAAGGACAAAAATTGCTCAAGATATTGAAAGGCTAATACATCAGAGTGATATCATAGATCGTGTGGTAT
ATGACTTGGATAACCCAAATTACACCATTCCAGAAGAGGGAGATATTTTGAAATTTAACTCCAAATTTGA
GTCTGGGAATCTGCGCAAAGTAATTCAAATTAGAAAAAATGAATATGATCTTATTCTGAACTCAGACATA
AACAGCAATCATTATCATCAGTGGTTTTACTTTGAAGTCAGTGGAATGCGACCAGGTGTTGCTTACAGGT
TTAACATCATTAACTGTGAAAAGTCCAACAGTCAGTTTAATTATGGTATGCAACCACTCATGTATTCGGT
TCAGGAAGCATTAAATGCCAGACCATGGTGGATTCGTATGGGGACTGACATTTGTTACTATAAAAATCAT
TTCTCAAGAAGTTCAGTTGCTGCAGGTGGGCAAAAGGGAAAATCCTACTATACAATTACATTTACTGTCA
ATTTTCCACATAAAGATGATGTTTGCTACTTTGCTTATCACTATCCATATACGTATTCAACTTTACAGAT
GCATCTTCAAAAATTGGAATCAGCACACAATCCTCAGCAAATCTATTTTCGGAAAGATGTGTTATGTGAA
ACCCTGTCTGGAAACAGCTGCCCCTTGGTGACTATAACAGCAATGCCAGAGTCTAATTATTATGAACATA
TCTGCCATTTCAGAAATCGCCCTTACGTTTTCTTGTCTGCTCGGGTACATCCTGGAGAAACTAATGCAAG
TTGGGTTATGAAAGGAACGTTGGAATATCTCATGAGCAATAACCCCACTGCTCAGAGCTTACGAGAATCT
TATATTTTTAAAATTGTCCCTATGTTAAATCCAGATGGTGTCATCAATGGAAATCATCGCTGTTCTTTAA
GTGGAGAGGATTTGAATAGGCAGTGGCAAAGTCCAAGTCCGGATTTACATCCTACAATTTACCATGCTAA
GGGGCTGTTGCAATACTTGGCTGCAGTGAAGCGTTTACCCTTGGTTTATTGTGATTATCATGGCCATTCC
CGAAAGAAGAATGTATTTATGTATGGTTGCAGCATCAAAGAGACAGTGTGGCATACCAATGATAATGCAA
CTTCATGTGATGTTGTGGAGGATACGGGATACAGGACATTGCCTAAGATACTGAGCCATATCGCCCCAGC
ATTTTGCATGAGCAGCTGTAGCTTCGTAGTGGAAAAATCTAAAGAATCCACAGCACGTGTTGTAGTTTGG
AGGGAAATAGGAGTACAAAGAAGTTATACCATGGAGAGTACTTTATGTGGCTGTGATCAGGGAAAATACA
AGGGTTTACAGATTGGTACCCGAGAACTGGAAGAGATGGGAGCAAAATTTTGTGTTGGTCTTTTACGTTT
GAAAAGACTGACCTCTCCATTGGAGTATAATCTGCCTTCCAGCCTGCTTGACTTTGAAAATGATTTAATT
GAATCAAGCTGCAAAGTAACTAGCCCTACCACTTATGTCTTGGATGAAGATGAACCTCGATTCCTTGAAG
AAGTTGATTACAGTGCAGAAAGTAATGATGAGTTAGATATTGAGTTGGCTGAAAATGTAGGAGATTATGA
ACCTTCTGCTCAAGAAGAAGTACTTTCTGACTCTGAATTATCAAGAACATACCTACCTTGA

Translation (1186 aa):
MSKLKVIPEKSLTNNSRIVGLLAQLEKINAEPSESDTARYVTSKILHLAQSQEKTRREMTAKGSTGMEIL
LSTLENTKDLQTTLNILSILVELVSAGGGRRVSFLVTKGGSQILLQLLMNASKESPPHEDLMVQIHSILA
KIGPKDKKFGVKARINGALNITLNLVKQNLQNHRLVLPCLQLLRVYSANSVNSVSLGKNGVVELMFKIIG
PFSKKNSSLIKVALDTLAALLKSKTNARRAVDRGYVQVLLTIYVDWHRHDNRHRNMLIRKGILQSLKSVT
NIKLGRKAFIDANGMKILYNTSQLPVIPVTGPVAQLYSLPPEVDDVVDESDDNDDIDVEAENETENEDDL
DQNFKNDDIETDINKLKPQQEPGRTIEDLKMYEHLFPELVDDFQDYDLISKEPKPFVFEGKVRGPIVVPT
AGEETSGNSGNLRKVVMKENISSKGDEGEKKSTFMDLAKEDIKDNDRTLQQQPGDQNRTISSVHGLNNDI
VKALDRITLQNIPSQTAPGFTAEMKKDCSLPLTVLTCAKACPHMATCGNVLFEGRTVQLGKLCCTGVETE
DDEDTESNSSVEQASVEVPDGPTLHDPDLYIEIVKNTKSVPEYSEVAYPDYFGHIPPPFKEPILERPYGV
QRTKIAQDIERLIHQSDIIDRVVYDLDNPNYTIPEEGDILKFNSKFESGNLRKVIQIRKNEYDLILNSDI
NSNHYHQWFYFEVSGMRPGVAYRFNIINCEKSNSQFNYGMQPLMYSVQEALNARPWWIRMGTDICYYKNH
FSRSSVAAGGQKGKSYYTITFTVNFPHKDDVCYFAYHYPYTYSTLQMHLQKLESAHNPQQIYFRKDVLCE
TLSGNSCPLVTITAMPESNYYEHICHFRNRPYVFLSARVHPGETNASWVMKGTLEYLMSNNPTAQSLRES
YIFKIVPMLNPDGVINGNHRCSLSGEDLNRQWQSPSPDLHPTIYHAKGLLQYLAAVKRLPLVYCDYHGHS
RKKNVFMYGCSIKETVWHTNDNATSCDVVEDTGYRTLPKILSHIAPAFCMSSCSFVVEKSKESTARVVVW
REIGVQRSYTMESTLCGCDQGKYKGLQIGTRELEEMGAKFCVGLLRLKRLTSPLEYNLPSSLLDFENDLI
ESSCKVTSPTTYVLDEDEPRFLEEVDYSAESNDELDIELAENVGDYEPSAQEEVLSDSELSRTYLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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