NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS82227.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82227.1 Public Homo sapiens 17 GPS1 24 110 108 CCDS HistoryNCBI Gene:2873Re-query CCDS DB by CCDS ID:82227.1Re-query CCDS DB by GeneID:2873See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82227.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000623691.3 ENSP00000485330.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000623691.3Link to Ensembl Protein Viewer:ENSP00000485330.1Re-query CCDS DB by Nucleotide ID:ENST00000623691Re-query CCDS DB by Protein ID:ENSP00000485330
Original member Current member NCBI NM_001330539.3 NP_001317468.1 Accepted alive Link to Nucleotide Sequence:NM_001330539.3Link to Protein Sequence:NP_001317468.1Re-query CCDS DB by Nucleotide ID:NM_001330539Re-query CCDS DB by Protein ID:NP_001317468Link to BLAST:NP_001317468.1

Chromosomal Locations for CCDS 82227.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 82051932 82051964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82053274 82053366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82053868 82054049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82054510 82054810 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82054898 82054975 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82055165 82055222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82055740 82055825 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056001 82056095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056286 82056391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056470 82056550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056629 82056766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82056840 82056974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 82057053 82057127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1461 nt):
ATGCCGCTGCCGGTTCAGGTGTTTAACTTGCAGGGGGCCGTGGAGCCCATGCAGATCGACGTGGACCCCC
AGGAAGACCCGCAGAATGCACCTGACGTCAACTACGTGGTGGAGAACCCCAGCCTGGATCTGGAACAGTA
CGCGGCCAGCTACAGCGGCCTGATGCGCATCGAACGGCTGCAGTTCATTGCTGATCACTGCCCCACGCTG
CGGGTGGAGGCCCTGAAGATGGCCCTCTCCTTCGTGCAGAGAACCTTTAACGTGGACATGTACGAGGAGA
TCCACCGCAAGCTCTCAGAGGCCACCAGGGAGCTGCAGAACGCACCCGACGCCATCCCTGAGAGCGGCGT
GGAGCCCCCAGCCCTGGACACGGCCTGGGTGGAGGCCACGCGGAAGAAGGCGCTGCTGAAGCTGGAGAAG
CTGGACACAGACCTGAAGAACTACAAGGGCAACTCCATCAAAGAGAGCATCCGGCGCGGCCACGACGACC
TGGGCGACCACTACCTGGACTGTGGGGACCTCAGCAACGCCCTCAAGTGCTATTCCCGGGCCCGGGACTA
CTGCACCAGCGCCAAACACGTCATCAACATGTGCCTCAATGTCATCAAGGTCAGCGTCTACTTGCAGAAT
TGGTCTCATGTGCTCAGCTACGTCAGCAAGGCTGAGTCCACCCCAGAGATTGCCGAGCGAGGAGAGCGTG
ACAGCCAGACCCAGGCCATCCTCACCAAGCTCAAGTGTGCCGCAGGCTTGGCAGAGCTGGCCGCCAGGAA
GTACAAGCAGGCTGCCAAGTGCCTCCTGCTGGCTTCCTTTGATCACTGTGACTTCCCTGAGCTGCTGTCC
CCCAGCAACGTGGCCATCTACGGTGGCCTGTGCGCCTTGGCTACCTTTGACCGGCAGGAGCTGCAGCGCA
ATGTCATCTCCAGCAGCTCCTTCAAGTTGTTCTTGGAGCTGGAGCCACAGGTCCGAGACATCATCTTCAA
ATTCTACGAGTCCAAGTACGCCTCATGTCTCAAGATGCTGGACGAGATGAAGGACAACCTGCTCCTGGAC
ATGTATCTGGCCCCCCATGTCAGGACCCTGTACACCCAGATTCGCAACCGTGCCCTCATCCAGTATTTCA
GCCCCTACGTGTCAGCCGACATGCATAGGATGGCGGCAGCCTTCAATACCACGGTGGCCGCCCTGGAGGA
CGAGCTGACGCAGCTAATCCTGGAGGGGCTGATCAGTGCCCGTGTGGACTCACACAGCAAGATCCTATAC
GCCCGGGACGTGGATCAGCGCAGCACCACCTTTGAGAAGTCTCTGTTGATGGGCAAGGAGTTCCAGCGCC
GCGCCAAGGCCATGATGCTGCGGGCAGCTGTGCTCCGCAACCAGATCCATGTCAAGTCCCCGCCCAGAGA
AGGGAGCCAGGGGGAGCTGACTCCAGCCAACAGCCAGTCCCGGATGAGCACCAACATGTGA

Translation (486 aa):
MPLPVQVFNLQGAVEPMQIDVDPQEDPQNAPDVNYVVENPSLDLEQYAASYSGLMRIERLQFIADHCPTL
RVEALKMALSFVQRTFNVDMYEEIHRKLSEATRELQNAPDAIPESGVEPPALDTAWVEATRKKALLKLEK
LDTDLKNYKGNSIKESIRRGHDDLGDHYLDCGDLSNALKCYSRARDYCTSAKHVINMCLNVIKVSVYLQN
WSHVLSYVSKAESTPEIAERGERDSQTQAILTKLKCAAGLAELAARKYKQAAKCLLLASFDHCDFPELLS
PSNVAIYGGLCALATFDRQELQRNVISSSSFKLFLELEPQVRDIIFKFYESKYASCLKMLDEMKDNLLLD
MYLAPHVRTLYTQIRNRALIQYFSPYVSADMHRMAAAFNTTVAALEDELTQLILEGLISARVDSHSKILY
ARDVDQRSTTFEKSLLMGKEFQRRAKAMMLRAAVLRNQIHVKSPPREGSQGELTPANSQSRMSTNM


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH