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Report for CCDS44416.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44416.1 Public Homo sapiens 10 STOX1 24 110 108 CCDS HistoryNCBI Gene:219736Re-query CCDS DB by CCDS ID:44416.1Re-query CCDS DB by GeneID:219736See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44416.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000399162.2 ENSP00000382115.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399162.2Link to Ensembl Protein Viewer:ENSP00000382115.2Re-query CCDS DB by Nucleotide ID:ENST00000399162Re-query CCDS DB by Protein ID:ENSP00000382115
Original member Current member NCBI NM_001130160.3 NP_001123632.1 Accepted alive Link to Nucleotide Sequence:NM_001130160.3Link to Protein Sequence:NP_001123632.1Re-query CCDS DB by Nucleotide ID:NM_001130160Re-query CCDS DB by Protein ID:NP_001123632Link to BLAST:NP_001123632.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001123632.1 169 Q6ZVD7-3 169 100% 0 0

Chromosomal Locations for CCDS 44416.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 68827624 68827933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68881958 68882110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 68892589 68892635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (510 nt):
ATGGCCCGGCCCGTGCAGCTGGCGCCGGGCTCGCTGGCGCTAGTGCTGTGCCGGCTGGAGGCGCAGAAGG
CGGCGGGGGCCGCGGAGGAGCCTGGTGGGCGCGCGGTGTTCCGCGCTTTCCGTCGCGCCAACGCGCGCTG
CTTCTGGAACGCGCGGCTGGCGCGCGCCGCCTCGCGGCTGGCCTTCCAGGGCTGGCTGCGGCGGGGGGTG
CTGCTGGTGCGCGCGCCCCCCGCCTGCCTGCAGGTGCTGCGCGATGCCTGGCGGCGCCGGGCCCTGCGGC
CGCCGCGCGGCTTCCGCATCAGGGCGGTGGGTGATGTCTTTCCAGTGCAAATGAATCCAATAACTCAATC
TCAGTTCGTACCTTTGGGTGAAGTTCTTTGCTGTGCTATATCTGATATGAATACAGCTCAGATTGTAGTA
ACGCAGGAATCACTTTTGGAGCGTTTGATGAAACATTACCCAGGACACAGAGTCTGGGATCTAATAATTC
AGTCATTTTGGATGGACTAA

Translation (169 aa):
MARPVQLAPGSLALVLCRLEAQKAAGAAEEPGGRAVFRAFRRANARCFWNARLARAASRLAFQGWLRRGV
LLVRAPPACLQVLRDAWRRRALRPPRGFRIRAVGDVFPVQMNPITQSQFVPLGEVLCCAISDMNTAQIVV
TQESLLERLMKHYPGHRVWDLIIQSFWMD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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