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Report for CCDS82953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
82953.1 Public Homo sapiens 4 HSPA4L 24 110 108 CCDS HistoryNCBI Gene:22824Re-query CCDS DB by CCDS ID:82953.1Re-query CCDS DB by GeneID:22824See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 82953.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000505726.1 ENSP00000425645.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505726.1Link to Ensembl Protein Viewer:ENSP00000425645.1Re-query CCDS DB by Nucleotide ID:ENST00000505726Re-query CCDS DB by Protein ID:ENSP00000425645
Original member Current member NCBI NM_001317382.2 NP_001304311.1 Accepted alive Link to Nucleotide Sequence:NM_001317382.2Link to Protein Sequence:NP_001304311.1Re-query CCDS DB by Nucleotide ID:NM_001317382Re-query CCDS DB by Protein ID:NP_001304311Link to BLAST:NP_001304311.1

Chromosomal Locations for CCDS 82953.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 127783652 127783680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127794077 127794134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127795768 127795908 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127798587 127798709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127801138 127801237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127801785 127801918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127803629 127803873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127804011 127804087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127805073 127805224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127805687 127805793 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127807996 127808129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127811437 127811636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127818325 127818420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127820428 127820565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127822769 127822894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127823517 127823624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127827305 127827424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127830638 127830799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 127832683 127832874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2442 nt):
ATGAAACCTATATTACTTTTTATGGAAAGGGCCTGTATATCATTGGGATCAAGAACTCGAGCCATTGGAA
ATGCAGCAAAGAGCCAGATAGTCACGAACGTAAGAAATACAATTCATGGCTTCAAAAAGCTTCATGGGCG
ATCATTTGATGATCCCATTGTGCAAACTGAAAGGATCAGGCTTCCCTATGAACTGCAGAAAATGCCTAAT
GGAAGTGCAGGAGTTAAGGTGCGGTACTTAGAGGAAGAGAGACCTTTTGCAATTGAGCAAGTTACTGGAA
TGCTGTTAGCCAAGCTTAAAGAGACTTCAGAAAATGCTTTGAAGAAACCAGTGGCTGACTGTGTGATTTC
AATTCCTAGCTTTTTTACTGATGCCGAGAGAAGATCTGTGATGGCTGCAGCCCAGGTTGCAGGCTTAAAT
TGTTTAAGGTTGATGAATGAAACTACTGCAGTTGCACTGGCGTATGGAATTTATAAACAGGATCTTCCCC
CATTAGATGAGAAACCAAGAAATGTAGTATTTATTGATATGGGACATTCTGCCTATCAGGTCTTGGTTTG
TGCTTTTAACAAAGGAAAACTTAAAGTCTTGGCTACTACCTTTGATCCATATTTGGGTGGCAGGAACTTT
GATGAGGCTTTAGTAGACTACTTCTGTGATGAGTTCAAGACCAAATATAAGATAAATGTGAAAGAAAACT
CTCGGGCCTTGTTGCGTTTATATCAGGAATGTGAAAAACTAAAGAAGCTAATGAGTGCAAATGCATCAGA
TCTTCCATTGAACATTGAGTGTTTCATGAATGACCTTGATGTTTCTAGTAAAATGAACAGGGCTCAATTT
GAACAACTGTGTGCTTCCCTTTTGGCCAGGGTTGAACCACCTTTAAAAGCAGTAATGGAACAAGCTAACT
TACAACGTGAAGACATTAGTAGTATAGAAATTGTAGGAGGAGCAACACGAATTCCTGCAGTGAAAGAACA
AATCACTAAATTCTTTCTTAAAGACATAAGTACCACATTAAATGCTGATGAAGCTGTTGCAAGAGGATGT
GCGTTACAGTGTGCGATTCTCTCACCAGCATTTAAAGTGCGTGAATTTTCCATAACAGACCTTGTTCCCT
ATTCAATCACATTAAGGTGGAAGACCTCTTTTGAAGATGGAAGTGGGGAATGTGAAGTTTTCTGTAAGAA
CCATCCTGCCCCATTCTCAAAAGTCATTACTTTCCACAAGAAGGAACCATTTGAACTAGAAGCATTTTAT
ACTAATTTACATGAAGTGCCTTATCCTGATGCAAGAATTGGGAGCTTCACTATTCAGAATGTTTTTCCAC
AGTCTGATGGTGATAGTTCCAAAGTGAAGGTTAAAGTTCGTGTTAACATCCATGGAATCTTCAGTGTGGC
TAGCGCATCAGTAATTGAGAAGCAAAATTTGGAAGGCGATCACAGTGATGCTCCAATGGAGACAGAAACT
TCATTTAAAAATGAAAACAAAGATAATATGGATAAAATGCAGGTTGATCAAGAAGAAGGGCATCAAAAAT
GTCATGCTGAACACACTCCAGAAGAGGAAATTGATCATACAGGAGCCAAAACAAAGTCAGCTGTCTCAGA
CAAACAAGACCGATTAAATCAGACACTTAAAAAAGGAAAAGTCAAAAGTATTGATCTACCGATCCAGAGT
AGCCTATGTAGACAACTAGGCCAAGATCTTCTCAACAGCTACATTGAAAATGAGGGGAAGATGATCATGC
AAGATAAGTTAGAGAAAGAAAGAAATGATGCTAAGAATGCCGTTGAAGAATATGTATATGATTTTAGAGA
CAGGCTGGGCACTGTCTATGAAAAATTCATCACTCCAGAAGACTTGAGTAAACTGTCTGCAGTATTGGAA
GACACAGAAAATTGGCTTTATGAAGACGGAGAGGACCAACCTAAACAAGTTTATGTGGATAAGCTTCAAG
AACTAAAGAAATACGGCCAGCCTATTCAAATGAAGTACATGGAGCATGAAGAGAGACCAAAAGCCTTAAA
TGACTTGGGAAAAAAGATCCAACTTGTCATGAAAGTGATAGAAGCTTATAGAAACAAGGATGAAAGATAT
GATCATCTGGATCCTACTGAAATGGAAAAGGTTGAAAAATGTATCAGTGATGCCATGAGTTGGCTGAATA
GTAAGATGAATGCACAGAACAAACTAAGTCTCACTCAAGATCCTGTGGTAAAAGTTTCAGAAATAGTAGC
AAAGTCAAAGGAACTGGATAATTTCTGTAACCCCATCATTTACAAGCCCAAACCAAAAGCAGAAGTTCCT
GAAGACAAACCAAAAGCTAATAGTGAACACAATGGCCCAATGGATGGACAGAGTGGAACTGAAACTAAAT
CAGATTCAACAAAAGACAGCTCACAGCATACTAAATCCTCTGGAGAGATGGAAGTGGACTAA

Translation (813 aa):
MKPILLFMERACISLGSRTRAIGNAAKSQIVTNVRNTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPN
GSAGVKVRYLEEERPFAIEQVTGMLLAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLN
CLRLMNETTAVALAYGIYKQDLPPLDEKPRNVVFIDMGHSAYQVLVCAFNKGKLKVLATTFDPYLGGRNF
DEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLDVSSKMNRAQF
EQLCASLLARVEPPLKAVMEQANLQREDISSIEIVGGATRIPAVKEQITKFFLKDISTTLNADEAVARGC
ALQCAILSPAFKVREFSITDLVPYSITLRWKTSFEDGSGECEVFCKNHPAPFSKVITFHKKEPFELEAFY
TNLHEVPYPDARIGSFTIQNVFPQSDGDSSKVKVKVRVNIHGIFSVASASVIEKQNLEGDHSDAPMETET
SFKNENKDNMDKMQVDQEEGHQKCHAEHTPEEEIDHTGAKTKSAVSDKQDRLNQTLKKGKVKSIDLPIQS
SLCRQLGQDLLNSYIENEGKMIMQDKLEKERNDAKNAVEEYVYDFRDRLGTVYEKFITPEDLSKLSAVLE
DTENWLYEDGEDQPKQVYVDKLQELKKYGQPIQMKYMEHEERPKALNDLGKKIQLVMKVIEAYRNKDERY
DHLDPTEMEKVEKCISDAMSWLNSKMNAQNKLSLTQDPVVKVSEIVAKSKELDNFCNPIIYKPKPKAEVP
EDKPKANSEHNGPMDGQSGTETKSDSTKDSSQHTKSSGEMEVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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