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Report for CCDS3014.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3014.1 Public Homo sapiens 3 PARP9 24 110 108 CCDS HistoryNCBI Gene:83666Re-query CCDS DB by CCDS ID:3014.1Re-query CCDS DB by GeneID:83666See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3014.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360356.6 ENSP00000353512.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360356.6Link to Ensembl Protein Viewer:ENSP00000353512.2Re-query CCDS DB by Nucleotide ID:ENST00000360356Re-query CCDS DB by Protein ID:ENSP00000353512
Original member Current member NCBI NM_001146102.2 NP_001139574.1 Accepted alive Link to Nucleotide Sequence:NM_001146102.2Link to Protein Sequence:NP_001139574.1Re-query CCDS DB by Nucleotide ID:NM_001146102Re-query CCDS DB by Protein ID:NP_001139574Link to BLAST:NP_001139574.1
Original member Current member NCBI NM_001387871.1 NP_001374800.1 Accepted alive Link to Nucleotide Sequence:NM_001387871.1Link to Protein Sequence:NP_001374800.1Re-query CCDS DB by Nucleotide ID:NM_001387871Re-query CCDS DB by Protein ID:NP_001374800Link to BLAST:NP_001374800.1
Original member Current member NCBI NM_001387872.1 NP_001374801.1 Accepted alive Link to Nucleotide Sequence:NM_001387872.1Link to Protein Sequence:NP_001374801.1Re-query CCDS DB by Nucleotide ID:NM_001387872Re-query CCDS DB by Protein ID:NP_001374801Link to BLAST:NP_001374801.1
Original member Current member NCBI NM_031458.3 NP_113646.2 Accepted alive Link to Nucleotide Sequence:NM_031458.3Link to Protein Sequence:NP_113646.2Re-query CCDS DB by Nucleotide ID:NM_031458Re-query CCDS DB by Protein ID:NP_113646Link to BLAST:NP_113646.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139574.1 854 Q8IXQ6-1 854 100% 0 0
NP_001374800.1 854 Q8IXQ6-1 854 100% 0 0
NP_001374801.1 854 Q8IXQ6-1 854 100% 0 0
NP_113646.2 854 Q8IXQ6-1 854 100% 0 0

Chromosomal Locations for CCDS 3014.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 122528364 122528743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122536168 122536342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122536934 122537073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122540472 122540852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122545432 122545489 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122550584 122550802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122552418 122552639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122555286 122556121 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122558329 122558467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 122559606 122559620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2565 nt):
ATGGACTTTTCCATGGTGGCCGGAGCAGCAGCTTACAATGAAAAATCAGGTAGGATTACCTCGCTCTCAC
TCTTGTTTCAGAAAGTCTTTGCTCAGATCTTTCCTCAGTGGAGAAAGGGGAATACAGAAGAATGTCTCCC
CTACAAGTGCTCAGAGACTGGTGCTCTTGGAGAAAACTATAGTTGGCAAATTCCCATTAACCACAATGAC
TTCAAAATTTTAAAAAATAATGAGCGTCAGCTGTGTGAAGTCCTCCAGAATAAGTTTGGCTGTATCTCTA
CCCTGGTCTCTCCAGTTCAGGAAGGCAACAGCAAATCTCTGCAAGTGTTCAGAAAAATGCTGACTCCTAG
GATAGAGTTATCAGTCTGGAAAGATGACCTCACCACACATGCTGTTGATGCTGTGGTGAATGCAGCCAAT
GAAGATCTTCTGCATGGGGGAGGCCTGGCCCTGGCCCTGGTAAAAGCTGGTGGATTTGAAATCCAAGAAG
AGAGCAAACAGTTTGTTGCCAGATATGGTAAAGTGTCAGCTGGTGAGATAGCTGTCACGGGAGCAGGGAG
GCTTCCCTGCAAACAGATCATCCATGCTGTTGGGCCTCGGTGGATGGAATGGGATAAACAGGGATGTACT
GGAAAGCTGCAGAGGGCCATTGTAAGTATTCTGAATTATGTCATCTATAAAAATACTCACATTAAGACAG
TAGCAATTCCAGCCTTGAGCTCTGGGATTTTTCAGTTCCCTCTGAATTTGTGTACAAAGACTATTGTAGA
GACTATCCGGGTTAGTTTGCAAGGGAAGCCAATGATGAGTAATTTGAAAGAAATTCACCTGGTGAGCAAT
GAGGACCCTACTGTTGCTGCCTTTAAAGCTGCTTCAGAATTCATCCTAGGGAAGAGTGAGCTGGGACAAG
AAACCACCCCTTCTTTCAATGCAATGGTCGTGAACAACCTGACCCTCCAGATTGTCCAGGGCCACATTGA
ATGGCAGACGGCAGATGTAATTGTTAATTCTGTAAACCCACATGATATTACAGTTGGACCTGTGGCAAAG
TCAATTCTACAACAAGCAGGAGTTGAAATGAAATCGGAATTTCTTGCCACAAAGGCTAAACAGTTTCAAC
GGTCCCAGTTGGTACTGGTCACAAAAGGATTTAACTTGTTCTGTAAATATATATACCATGTACTGTGGCA
TTCAGAATTTCCTAAACCTCAGATATTAAAACATGCAATGAAGGAGTGTTTGGAAAAATGCATTGAGCAA
AATATAACTTCCATTTCCTTTCCTGCCCTTGGGACTGGAAACATGGAAATAAAGAAGGAAACAGCAGCAG
AGATTTTGTTTGATGAAGTTTTAACATTTGCCAAAGACCATGTAAAACACCAGTTAACTGTAAAATTTGT
GATCTTTCCAACAGATTTGGAGATATATAAGGCTTTCAGTTCTGAAATGGCAAAGAGGTCCAAGATGCTG
AGTTTGAACAATTACAGTGTCCCCCAGTCAACCAGAGAGGAGAAAAGAGAAAATGGGCTTGAAGCTAGAT
CTCCTGCCATCAATCTGATGGGATTCAACGTGGAAGAGATGTATGAGGCCCACGCATGGATCCAAAGAAT
CCTGAGTCTCCAGAACCACCACATCATTGAGAATAATCATATTCTGTACCTTGGGAGAAAGGAACATGAC
ATTTTGTCTCAGCTTCAGAAAACTTCAAGTGTCTCCATCACAGAAATTATCAGCCCAGGAAGGACAGAGT
TAGAGATTGAAGGAGCCCGGGCTGACCTCATTGAGGTGGTTATGAACATTGAAGATATGCTTTGTAAAGT
ACAGGAGGAAATGGCAAGGAAAAAGGAGCGAGGCCTTTGGCGCTCGTTAGGACAGTGGACTATTCAGCAA
CAAAAAACCCAAGACGAAATGAAAGAAAATATCATATTTCTGAAATGTCCTGTGCCTCCAACTCAAGAGC
TTCTAGATCAAAAGAAACAGTTTGAAAAATGTGGTTTGCAGGTTCTAAAGGTGGAGAAGATAGACAATGA
GGTCCTTATGGCTGCCTTTCAAAGAAAGAAGAAAATGATGGAAGAAAAACTGCACAGGCAACCTGTGAGC
CATAGGCTGTTTCAGCAAGTCCCATACCAGTTCTGCAATGTGGTATGCAGAGTTGGCTTTCAAAGAATGT
ACTCGACACCTTGCGATCCAAAATACGGAGCTGGCATATACTTCACCAAGAACCTCAAAAACCTGGCAGA
GAAGGCCAAGAAAATCTCTGCTGCAGATAAGCTGATCTATGTGTTTGAGGCTGAAGTACTCACAGGCTTC
TTCTGCCAGGGACATCCGTTAAATATTGTTCCCCCACCACTGAGTCCTGGAGCTATAGATGGTCATGACA
GTGTGGTTGACAATGTCTCCAGCCCTGAAACCTTTGTTATTTTTAGTGGCATGCAGGCTATACCTCAGTA
TTTGTGGACATGCACCCAGGAATATGTACAGTCACAAGATTACTCATCAGGACCAATGAGACCCTTTGCA
CAGCATCCTTGGAGGGGATTCGCAAGTGGCAGCCCTGTTGATTAA

Translation (854 aa):
MDFSMVAGAAAYNEKSGRITSLSLLFQKVFAQIFPQWRKGNTEECLPYKCSETGALGENYSWQIPINHND
FKILKNNERQLCEVLQNKFGCISTLVSPVQEGNSKSLQVFRKMLTPRIELSVWKDDLTTHAVDAVVNAAN
EDLLHGGGLALALVKAGGFEIQEESKQFVARYGKVSAGEIAVTGAGRLPCKQIIHAVGPRWMEWDKQGCT
GKLQRAIVSILNYVIYKNTHIKTVAIPALSSGIFQFPLNLCTKTIVETIRVSLQGKPMMSNLKEIHLVSN
EDPTVAAFKAASEFILGKSELGQETTPSFNAMVVNNLTLQIVQGHIEWQTADVIVNSVNPHDITVGPVAK
SILQQAGVEMKSEFLATKAKQFQRSQLVLVTKGFNLFCKYIYHVLWHSEFPKPQILKHAMKECLEKCIEQ
NITSISFPALGTGNMEIKKETAAEILFDEVLTFAKDHVKHQLTVKFVIFPTDLEIYKAFSSEMAKRSKML
SLNNYSVPQSTREEKRENGLEARSPAINLMGFNVEEMYEAHAWIQRILSLQNHHIIENNHILYLGRKEHD
ILSQLQKTSSVSITEIISPGRTELEIEGARADLIEVVMNIEDMLCKVQEEMARKKERGLWRSLGQWTIQQ
QKTQDEMKENIIFLKCPVPPTQELLDQKKQFEKCGLQVLKVEKIDNEVLMAAFQRKKKMMEEKLHRQPVS
HRLFQQVPYQFCNVVCRVGFQRMYSTPCDPKYGAGIYFTKNLKNLAEKAKKISAADKLIYVFEAEVLTGF
FCQGHPLNIVPPPLSPGAIDGHDSVVDNVSSPETFVIFSGMQAIPQYLWTCTQEYVQSQDYSSGPMRPFA
QHPWRGFASGSPVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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