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Report for CCDS1945.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1945.1 Public Homo sapiens 2 CCDC142 24 110 108 CCDS HistoryNCBI Gene:84865Re-query CCDS DB by CCDS ID:1945.1Re-query CCDS DB by GeneID:84865See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1945.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000290418.4 ENSP00000290418.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000290418.4Link to Ensembl Protein Viewer:ENSP00000290418.4Re-query CCDS DB by Nucleotide ID:ENST00000290418Re-query CCDS DB by Protein ID:ENSP00000290418
Original member Current member NCBI NM_032779.4 NP_116168.3 Accepted alive Link to Nucleotide Sequence:NM_032779.4Link to Protein Sequence:NP_116168.3Re-query CCDS DB by Nucleotide ID:NM_032779Re-query CCDS DB by Protein ID:NP_116168Link to BLAST:NP_116168.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116168.3 743 Q17RM4-2 743 100% 0 0

Chromosomal Locations for CCDS 1945.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74474546 74474802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74474916 74475115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74475225 74475402 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74475612 74475726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74480769 74480882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74480956 74481065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74481223 74481372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74481452 74481538 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74481817 74482837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2232 nt):
ATGGCCCAGGCGTCTCGCTCAGGTAGCCTGCCTCCACTCGTTATCGTGCCCCCGCTGAGGGCGCAACCCG
GGGGCACTGGGGAGGAGCAGTGGGAGAGAAGTCGAACGGGCGGTCTTCGCTGGGAGGTTCACTGCTGGCC
GAGCGGAACTTCTGGAGGGACGCCGTGGTGGCCGACGCCGGCGGATGTGAGCGAGGACTACGAGGCTGAT
GCTGCGGCCTGGAGGCGGGGGCCCGCAGGTGGCGGCCCGATCCCTCCCGCGCTGCAGCGTCTCCGGGCGG
TGTTGCTGCGGCTGCATCGCGAGCGGGAGCAGCTCCTCCAGGCCCGAGACTGCGCCTACCACCTACAGTC
GGCTGTGCGACTCATGAAGACCCTGAGTCCTGGCTCGCCATCCGGCGGCCCTAGCCCCTTGCCCCAGTGG
TGCCGCGACCTGCAGCTGCACCCTTCCCAAGGGGCGGTTCTGCGAATCGGCCCTGGGGAGACTCTCGAGC
CGCTGCTGCTAGCGCGCCCCATCGGACTAGCCGCCCAGTGCCTGGAGGCTGTCATCGAGATGCAGCTTCG
CGCTCTCGGCCGGGAGCCCGCCAGCCCGGGCCTGTCGTCCCAACTCGCCGAGCTGCTCTTTGCACTTCCC
GCCTACCACACACTACAGAGAAAAGCCTTGAGCCACGTCCCAGGGGCCGCACGTCCTTTCCCCACGTCCC
GTGTGCTCCGCCTCTTGACGGGGGAGCGGGGTTGCCAGGTGGCAAGTCGGCTGGACGAGGCGCTCCAAGG
ATCGGCGTTGAGGGACCAGCTCCGCAGGCGGTGCCAAGAGGAGGGGGATCTGCTACCAGGGCTGCTGGGC
CTGGTCGGGGGCGTGGCGGGTTCAGCCAGCTGTGGACTAGGGCTCGGAGGGGCTGGGGCCTTGTGGAGCC
AATACTGGACCCTGCTGTGGGCAGCCTGTGCTCAGAGTCTGGACCTAAATCTGGGACCCTGGAGGGACCC
CAGGGCAACAGCGCAACAGCTGAGTCAGGCACTGGGTCAGGCATCCCTGCCTCAGGAGTGTGAGAAGGAG
CTGGCATCTTTGTGTCACAGACTACTTCATCAGTCGCTTATCTGGAGCTGGGACCAAGGTTTCTGCCAGG
CCTTGGGATCAGCTCTTGGGGGTCAGAGCAGCCTTCCCACATCCTCTGGCACTGCTGAACTTTTGCAGCA
GCTCTTTCCTCCTCTCTTGGATGCCCTTCGAGAGCCCAGGTTACGACGGATTTTCTGCCAGCCTGCAGGT
CTCTGTACCCTTCAGACCACCTTGCTCTGGTTCCTGGGCAGAGCTCAGCAGTACTTGGCAGCATGGGACC
CAGCTTCCTTCCTGCTCCTGATCCAAAAGGACTTACCTCCTCTGTTGCATGAGGCAGAAGCTTTGTATAG
CCTGGCCTCAGAGGAAAGCTTAGCTCTGGAAGTGGAGCAGCAGCTGGGCCTGGAGATCCAGAAGCTGACT
GCACAGATCCAGCTCCTGCCTGAAGAGTCACTAAGTGTCTTTTCTCAAGAATGTCATAAACAAGCCATGC
AAGGTTTCAAGCTCTACATGCCACGGGGTCGGTACTGGCGGCTTCGTCTCTGTCCTGAACCTCCCAGTGC
TCCTAGTGAGTATGCTGGTTTAGTGGTCCGCACCGTACTGGAGCCTGTGTTGCAAGGATTGCAAGGGTTG
CCACCTCAAGCCCAGGCCCCTGCCCTTGGTCAGGCTCTGACGGCCATCGTGGGTGCCTGGCTTGACCACA
TTCTTACCCATGGGATTCGGTTCAGCCTGCAGGGAGCGCTGCAGCTCAAACAAGACTTTGGAGTGGTCAG
GGAGTTGCTGGAAGAGGAGCAGTGGAGCCTGTCCCCTGATCTCCGCCAGACCCTGCTCATGCTCAGCATC
TTCCAGCAGCTGGATGGGGCCCTGCTGTGTCTGTTGCAGCAGCCCCTGCCCAAGTCTCAAGTCCACAGGA
GGCCCCCCTGTTGCTGTGCTTGTCAGGAGGTCCAGACCACGAAATTGCCCAGCAGCTGCCTCAATAGCCT
GGAGAGCTTGGAGCCCCCGCTCCAGCCTGGAACATCTCCAGCCCAGACAGGTCAGCTGCAAAGCACACTA
GGAGGAAGGGGACCTAGCCCGGAGGGCTACCTGGTGGGAAATCAGCAGGCCTGGCTTGCCCTCAGGCAAC
ACCAGCGACCCCGTTGGCACCTGCCGTTTTTTTCCTGCCTGGGAACCAGTCCTGAATCCTAA

Translation (743 aa):
MAQASRSGSLPPLVIVPPLRAQPGGTGEEQWERSRTGGLRWEVHCWPSGTSGGTPWWPTPADVSEDYEAD
AAAWRRGPAGGGPIPPALQRLRAVLLRLHREREQLLQARDCAYHLQSAVRLMKTLSPGSPSGGPSPLPQW
CRDLQLHPSQGAVLRIGPGETLEPLLLARPIGLAAQCLEAVIEMQLRALGREPASPGLSSQLAELLFALP
AYHTLQRKALSHVPGAARPFPTSRVLRLLTGERGCQVASRLDEALQGSALRDQLRRRCQEEGDLLPGLLG
LVGGVAGSASCGLGLGGAGALWSQYWTLLWAACAQSLDLNLGPWRDPRATAQQLSQALGQASLPQECEKE
LASLCHRLLHQSLIWSWDQGFCQALGSALGGQSSLPTSSGTAELLQQLFPPLLDALREPRLRRIFCQPAG
LCTLQTTLLWFLGRAQQYLAAWDPASFLLLIQKDLPPLLHEAEALYSLASEESLALEVEQQLGLEIQKLT
AQIQLLPEESLSVFSQECHKQAMQGFKLYMPRGRYWRLRLCPEPPSAPSEYAGLVVRTVLEPVLQGLQGL
PPQAQAPALGQALTAIVGAWLDHILTHGIRFSLQGALQLKQDFGVVRELLEEEQWSLSPDLRQTLLMLSI
FQQLDGALLCLLQQPLPKSQVHRRPPCCCACQEVQTTKLPSSCLNSLESLEPPLQPGTSPAQTGQLQSTL
GGRGPSPEGYLVGNQQAWLALRQHQRPRWHLPFFSCLGTSPES


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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