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Report for CCDS11322.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11322.2 Public Homo sapiens 17 SYNRG 24 110 108 CCDS HistoryNCBI Gene:11276Re-query CCDS DB by CCDS ID:11322.2Re-query CCDS DB by GeneID:11276See the combined annotation on chromosome 17 in Sequence Viewer

Public Note for CCDS 11322.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available full-length transcript data.

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 11322.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621136.4 ENSP00000484529.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621136.4Link to Ensembl Protein Viewer:ENSP00000484529.1Re-query CCDS DB by Nucleotide ID:ENST00000621136Re-query CCDS DB by Protein ID:ENSP00000484529
Original member Current member NCBI NM_080550.5 NP_542117.3 Accepted alive Link to Nucleotide Sequence:NM_080550.5Link to Protein Sequence:NP_542117.3Re-query CCDS DB by Nucleotide ID:NM_080550Re-query CCDS DB by Protein ID:NP_542117Link to BLAST:NP_542117.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542117.3 1224 Q9UMZ2-4 1224 100% 0 0

Chromosomal Locations for CCDS 11322.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 37518940 37519071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37520538 37520648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37535979 37536127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37538324 37538420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37539192 37539245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37540380 37540543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37541972 37542565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37553115 37554059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37561195 37561257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37561471 37561589 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37568791 37568924 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37570637 37570885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37571791 37571987 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37576341 37576418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37584648 37584759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37585325 37585430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37586419 37586549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37596223 37596344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37600363 37600403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 37609279 37609355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3675 nt):
ATGGCGCTGCGGCCAGGAGCTGGTTCTGGTGGCGGCGGGGCCGCGGGAGCTGGCGCGGGGTCCGCCGGGG
GAGGCGGCTTCATGTTTCCTGTTGCAGGTGGGATAAGACCCCCTCAAGCAGGCCTGATGCCGATGCAGCA
ACAAGGATTTCCTATGGTCTCTGTCATGCAGCCTAATATGCAAGGCATTATGGGAATGAATTACAGCTCT
CAGATGTCCCAAGGACCTATTGCTATGCAGGCAGGAATACCAATGGGACCAATGCCAGCAGCGGGAATGC
CTTACCTAGGACAAGCACCCTTCCTGGGCATGCGTCCTCCAGGCCCACAGTACACTCCAGACATGCAGAA
GCAGTTTGCCGAAGAGCAGCAGAAACGATTTGAACAGCAGCAAAAACTCTTAGAAGAAGAAAGAAAAAGA
CGCCAGTTTGAAGAGCAGAAGCAAAAGCTCAGACTTTTGAGCAGTGTGAAACCCAAGACAGGAGAGAAGA
GTAGAGATGATGCTTTGGAAGCCATAAAAGGAAATTTAGATGGGTTTTCCAGAGATGCAAAAATGCACCC
TACTCCAGCATCGCACCCCAAGAAACCAGGTGTGGGAGTATTTCCCTCACAGGATCCTGCTCAGCCCAGA
ATGCCTCCTTGGATTTACAATGAGAGTTTGGTTCCAGATGCCTATAAGAAAATCTTAGAAACCACAATGA
CTCCAACTGGAATAGATACTGCCAAACTGTATCCCATTCTGATGTCATCTGGGCTTCCCAGGGAAACTCT
TGGACAGATATGGGCCTTAGCTAATCGAACTACACCTGGCAAACTTACAAAAGAAGAACTTTATACCGTT
CTAGCCATGATAGCGGTAACACAGAGGGGCGTTCCTGCAATGAGTCCTGATGCTTTAAACCAGTTCCCAG
CAGCTCCTATTCCAACTTTAAGTGGCTTTTCTATGACTCTGCCTACACCGGTGAGTCAGCCAACTGTGAT
ACCTTCAGGTCCTGCGGGCTCCATGCCCCTCAGCCTTGGACAGCCAGTCATGGGCATTAACCTTGTTGGA
CCAGTGGGTGGAGCTGCAGCCCAGGCTTCTAGTGGTTTCATACCAACCTACCCTGCAAATCAGGTAGTAA
AGCCAGAAGAAGATGACTTCCAGGATTTTCAAGATGCTTCTAAGTCAGGATCCCTTGATGACTCATTCAG
TGATTTCCAAGAGTTGCCTGCTTCTTCAAAAACAAGTAACTCCCAGCATGGAAACAGTGCCCCTTCTTTG
TTGATGCCACTTCCTGGAACTAAAGCATTGCCTTCAATGGACAAATATGCTGTGTTTAAAGGAATTGCAG
CTGACAAGTCCTCTGAAAATACTGTTCCACCTGGAGATCCTGGTGATAAATATAGTGCTTTCAGAGAACT
TGAACAGACAGCAGAGAATAAACCTTTAGGAGAAAGCTTTGCAGAATTCAGATCTGCAGGAACTGATGAT
GGTTTCACCGATTTTAAAACAGCCGATAGTGTATCACCACTAGAGCCACCAACAAAAGACAAAACTTTTC
CACCATCCTTCCCCTCAGGAACTATACAACAGAAACAACAAACACAAGTGAAAAACCCTCTGAACTTAGC
AGACCTAGATATGTTTTCCTCAGTTAATTGCAGCAGCGAGAAACCATTGTCTTTTTCAGCTGTGTTTAGC
ACATCAAAATCAGTTTCTACACCACAGTCAACAGGTTCTGCTGCTACTATGACAGCATTGGCAGCAACAA
AAACTTCTAGTTTGGCTGATGATTTTGGAGAATTCAGCCTTTTTGGGGAATATTCTGGTCTAGCACCTGT
TGGGGAGCAGGATGACTTTGCAGATTTTATGGCTTTCAGTAATAGCTCTATTTCATCTGAGCAAAAGCCG
GATGACAAATATGATGCCCTTAAAGAGGAAGCCAGTCCTGTTCCTCTAACCAGCAACGTGGGCAGCACAG
TGAAGGGTGGACAAAACTCGACTGCTGCGTCTACCAAGTACGATGTCTTCAGACAACTTTCTCTGGAAGG
GTCTGGACTAGGTGTTGAAGACCTGAAAGATAACACTCCTTCAGGAAAAAGTGATGATGATTTTGCTGAC
TTCCACTCCAGTAAATTTTCTTCCATAAACTCGGACAAATCCCTGGGAGAGAAAGCAGTGGCTTTCAGAC
ACACCAAAGAAGACTCTGCATCAGTGAAGTCCTTAGATCTCCCTTCCATTGGTGGCAGCAGTGTTGGCAA
GGAGGACTCTGAAGATGCACTCTCTGTTCAGTTTGACATGAAATTGGCTGATGTGGGAGGAGATCTTAAG
CATGTCATGTCTGATAGCTCTTTGGATTTACCAACAGTTAGTGGCCAGCATCCTCCTGCTGCAGATATAG
AGGACTTAAAATATGCTGCTTTTGGAAGCTACAGTAGCAATTTTGCAGTGAGCACACTTACAAGCTATGA
CTGGTCAGACAGGGATGATGCAACTCAGGGCAGAAAACTCTCTCCATTTGTCCTCTCAGCAGGAAGTGGA
TCCCCCTCAGCCACCTCAATTCTTCAAAAGAAAGAGACTTCATTTGGCAGTTCTGAAAACATCACCATGA
CATCTCTCTCCAAAGTAACGACCTTTGTAAGTGAAGATGCTCTTCCAGAGACCACCTTCCCAGCTCTTGC
CAGTTTTAAAGACACGATTCCTCAGACCAGTGAGCAAAAGGAATATGAAAACAGAGACTATAAAGATTTC
ACAAAACAGGACCTGCCTACGGCTGAACGGAGCCAGGAGGCCACGTGTCCCAGCCCAGCGTCCAGTGGTG
CCTCTCAAGAAACCCCGAACGAATGTTCGGATGACTTTGGAGAGTTTCAAAGTGAAAAGCCCAAAATCAG
CAAATTTGACTTCTTAGTAGCCACTTCACAAAGCAAAATGAAATCCAGTGAAGAAATGATCAAAAGTGAG
CTGGCAACCTTTGACCTTTCTGTTCAAGGATCACACAAGAGGAGTTTGAGCCTTGGTGATAAAGAAATAA
GCCGTTCTTCTCCTTCTCCAGCTTTGGAGCAGCCTTTCAGAGACCGTTCCAATACTCTGAATGAGAAGCC
CGCCCTGCCCGTCATCCGAGACAAGTACAAAGACCTGACGGGAGAGGTGGAGGAAAATGAGAGATATGCA
TATGAATGGCAGAGATGCCTGGGGAGTGCCCTGAATGTCATTAAGAAGGCAAATGATACCTTAAATGGAA
TCAGTAGTAGTTCTGTTTGCACAGAAGTAATTCAGTCAGCTCAAGGCATGGAATATTTATTAGGTGTTGT
TGAAGTGTACAGGGTAACCAAGCGTGTGGAGCTGGGGATAAAAGCCACTGCAGTGTGCAGTGAGAAACTC
CAGCAGTTGCTGAAGGACATCGATAAAGTATGGAATAACCTAATCGGCTTCATGTCACTCGCCACACTCA
CACCAGATGAAAACTCGCTGGATTTTTCCTCCTGTATGTTACGGCCTGGGATTAAAAATGCTCAGGAGCT
TGCCTGTGGAGTGTGCCTCTTGAATGTGGACTCGAGGAGCCGGGCATTCAACTCAGAAACAGACAGTTTC
AAGCTGGCCTATGGAGGGCACCAGTATCACGCCAGCTGTGCCAACTTCTGGATCAACTGTGTCGAACCAA
AGCCTCCTGGCCTCGTCCTGCCTGACCTGCTCTGA

Translation (1224 aa):
MALRPGAGSGGGGAAGAGAGSAGGGGFMFPVAGGIRPPQAGLMPMQQQGFPMVSVMQPNMQGIMGMNYSS
QMSQGPIAMQAGIPMGPMPAAGMPYLGQAPFLGMRPPGPQYTPDMQKQFAEEQQKRFEQQQKLLEEERKR
RQFEEQKQKLRLLSSVKPKTGEKSRDDALEAIKGNLDGFSRDAKMHPTPASHPKKPGVGVFPSQDPAQPR
MPPWIYNESLVPDAYKKILETTMTPTGIDTAKLYPILMSSGLPRETLGQIWALANRTTPGKLTKEELYTV
LAMIAVTQRGVPAMSPDALNQFPAAPIPTLSGFSMTLPTPVSQPTVIPSGPAGSMPLSLGQPVMGINLVG
PVGGAAAQASSGFIPTYPANQVVKPEEDDFQDFQDASKSGSLDDSFSDFQELPASSKTSNSQHGNSAPSL
LMPLPGTKALPSMDKYAVFKGIAADKSSENTVPPGDPGDKYSAFRELEQTAENKPLGESFAEFRSAGTDD
GFTDFKTADSVSPLEPPTKDKTFPPSFPSGTIQQKQQTQVKNPLNLADLDMFSSVNCSSEKPLSFSAVFS
TSKSVSTPQSTGSAATMTALAATKTSSLADDFGEFSLFGEYSGLAPVGEQDDFADFMAFSNSSISSEQKP
DDKYDALKEEASPVPLTSNVGSTVKGGQNSTAASTKYDVFRQLSLEGSGLGVEDLKDNTPSGKSDDDFAD
FHSSKFSSINSDKSLGEKAVAFRHTKEDSASVKSLDLPSIGGSSVGKEDSEDALSVQFDMKLADVGGDLK
HVMSDSSLDLPTVSGQHPPAADIEDLKYAAFGSYSSNFAVSTLTSYDWSDRDDATQGRKLSPFVLSAGSG
SPSATSILQKKETSFGSSENITMTSLSKVTTFVSEDALPETTFPALASFKDTIPQTSEQKEYENRDYKDF
TKQDLPTAERSQEATCPSPASSGASQETPNECSDDFGEFQSEKPKISKFDFLVATSQSKMKSSEEMIKSE
LATFDLSVQGSHKRSLSLGDKEISRSSPSPALEQPFRDRSNTLNEKPALPVIRDKYKDLTGEVEENERYA
YEWQRCLGSALNVIKKANDTLNGISSSSVCTEVIQSAQGMEYLLGVVEVYRVTKRVELGIKATAVCSEKL
QQLLKDIDKVWNNLIGFMSLATLTPDENSLDFSSCMLRPGIKNAQELACGVCLLNVDSRSRAFNSETDSF
KLAYGGHQYHASCANFWINCVEPKPPGLVLPDLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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