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Report for CCDS708.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
708.1 Public Homo sapiens 1 CLCA2 24 110 108 CCDS HistoryNCBI Gene:9635Re-query CCDS DB by CCDS ID:708.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 708.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370565.5 ENSP00000359596.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000370565.5Link to Ensembl Protein Viewer:ENSP00000359596.4Re-query CCDS DB by Nucleotide ID:ENST00000370565Re-query CCDS DB by Protein ID:ENSP00000359596
Original member Current member NCBI NM_006536.7 NP_006527.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006536.7Link to Protein Sequence:NP_006527.1Re-query CCDS DB by Nucleotide ID:NM_006536Re-query CCDS DB by Protein ID:NP_006527Link to BLAST:NP_006527.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006527.1 943 Q9UQC9 943 100% 0 0

Chromosomal Locations for CCDS 708.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 86424248 86424433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86425339 86425476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86428418 86428568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86430862 86430970 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86432369 86432528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86434518 86434745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86438876 86439106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86440148 86440325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86441437 86441543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86443787 86444011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86447508 86447778 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86450563 86450733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86453369 86453602 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 86455085 86455527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2832 nt):
ATGACCCAAAGGAGCATTGCAGGTCCTATTTGCAACCTGAAGTTTGTGACTCTCCTGGTTGCCTTAAGTT
CAGAACTCCCATTCCTGGGAGCTGGAGTACAGCTTCAAGACAATGGGTATAATGGATTGCTCATTGCAAT
TAATCCTCAGGTACCTGAGAATCAGAACCTCATCTCAAACATTAAGGAAATGATAACTGAAGCTTCATTT
TACCTATTTAATGCTACCAAGAGAAGAGTATTTTTCAGAAATATAAAGATTTTAATACCTGCCACATGGA
AAGCTAATAATAACAGCAAAATAAAACAAGAATCATATGAAAAGGCAAATGTCATAGTGACTGACTGGTA
TGGGGCACATGGAGATGATCCATACACCCTACAATACAGAGGGTGTGGAAAAGAGGGAAAATACATTCAT
TTCACACCTAATTTCCTACTGAATGATAACTTAACAGCTGGCTACGGATCACGAGGCCGAGTGTTTGTCC
ATGAATGGGCCCACCTCCGTTGGGGTGTGTTCGATGAGTATAACAATGACAAACCTTTCTACATAAATGG
GCAAAATCAAATTAAAGTGACAAGGTGTTCATCTGACATCACAGGCATTTTTGTGTGTGAAAAAGGTCCT
TGCCCCCAAGAAAACTGTATTATTAGTAAGCTTTTTAAAGAAGGATGCACCTTTATCTACAATAGCACCC
AAAATGCAACTGCATCAATAATGTTCATGCAAAGTTTATCTTCTGTGGTTGAATTTTGTAATGCAAGTAC
CCACAACCAAGAAGCACCAAACCTACAGAACCAGATGTGCAGCCTCAGAAGTGCATGGGATGTAATCACA
GACTCTGCTGACTTTCACCACAGCTTTCCCATGAATGGGACTGAGCTTCCACCTCCTCCCACATTCTCGC
TTGTACAGGCTGGTGACAAAGTGGTCTGTTTAGTGCTGGATGTGTCCAGCAAGATGGCAGAGGCTGACAG
ACTCCTTCAACTACAACAAGCCGCAGAATTTTATTTGATGCAGATTGTTGAAATTCATACCTTCGTGGGC
ATTGCCAGTTTCGACAGCAAAGGAGAGATCAGAGCCCAGCTACACCAAATTAACAGCAATGATGATCGAA
AGTTGCTGGTTTCATATCTGCCCACCACTGTATCAGCTAAAACAGACATCAGCATTTGTTCAGGGCTTAA
GAAAGGATTTGAGGTGGTTGAAAAACTGAATGGAAAAGCTTATGGCTCTGTGATGATATTAGTGACCAGC
GGAGATGATAAGCTTCTTGGCAATTGCTTACCCACTGTGCTCAGCAGTGGTTCAACAATTCACTCCATTG
CCCTGGGTTCATCTGCAGCCCCAAATCTGGAGGAATTATCACGTCTTACAGGAGGTTTAAAGTTCTTTGT
TCCAGATATATCAAACTCCAATAGCATGATTGATGCTTTCAGTAGAATTTCCTCTGGAACTGGAGACATT
TTCCAGCAACATATTCAGCTTGAAAGTACAGGTGAAAATGTCAAACCTCACCATCAATTGAAAAACACAG
TGACTGTGGATAATACTGTGGGCAACGACACTATGTTTCTAGTTACGTGGCAGGCCAGTGGTCCTCCTGA
GATTATATTATTTGATCCTGATGGACGAAAATACTACACAAATAATTTTATCACCAATCTAACTTTTCGG
ACAGCTAGTCTTTGGATTCCAGGAACAGCTAAGCCTGGGCACTGGACTTACACCCTGAACAATACCCATC
ATTCTCTGCAAGCCCTGAAAGTGACAGTGACCTCTCGCGCCTCCAACTCAGCTGTGCCCCCAGCCACTGT
GGAAGCCTTTGTGGAAAGAGACAGCCTCCATTTTCCTCATCCTGTGATGATTTATGCCAATGTGAAACAG
GGATTTTATCCCATTCTTAATGCCACTGTCACTGCCACAGTTGAGCCAGAGACTGGAGATCCTGTTACGC
TGAGACTCCTTGATGATGGAGCAGGTGCTGATGTTATAAAAAATGATGGAATTTACTCGAGGTATTTTTT
CTCCTTTGCTGCAAATGGTAGATATAGCTTGAAAGTGCATGTCAATCACTCTCCCAGCATAAGCACCCCA
GCCCACTCTATTCCAGGGAGTCATGCTATGTATGTACCAGGTTACACAGCAAACGGTAATATTCAGATGA
ATGCTCCAAGGAAATCAGTAGGCAGAAATGAGGAGGAGCGAAAGTGGGGCTTTAGCCGAGTCAGCTCAGG
AGGCTCCTTTTCAGTGCTGGGAGTTCCAGCTGGCCCCCACCCTGATGTGTTTCCACCATGCAAAATTATT
GACCTGGAAGCTGTAAAAGTAGAAGAGGAATTGACCCTATCTTGGACAGCACCTGGAGAAGACTTTGATC
AGGGCCAGGCTACAAGCTATGAAATAAGAATGAGTAAAAGTCTACAGAATATCCAAGATGACTTTAACAA
TGCTATTTTAGTAAATACATCAAAGCGAAATCCTCAGCAAGCTGGCATCAGGGAGATATTTACGTTCTCA
CCCCAAATTTCCACGAATGGACCTGAACATCAGCCAAATGGAGAAACACATGAAAGCCACAGAATTTATG
TTGCAATACGAGCAATGGATAGGAACTCCTTACAGTCTGCTGTATCTAACATTGCCCAGGCGCCTCTGTT
TATTCCCCCCAATTCTGATCCTGTACCTGCCAGAGATTATCTTATATTGAAAGGAGTTTTAACAGCAATG
GGTTTGATAGGAATCATTTGCCTTATTATAGTTGTGACACATCATACTTTAAGCAGGAAAAAGAGAGCAG
ACAAGAAAGAGAATGGAACAAAATTATTATAA

Translation (943 aa):
MTQRSIAGPICNLKFVTLLVALSSELPFLGAGVQLQDNGYNGLLIAINPQVPENQNLISNIKEMITEASF
YLFNATKRRVFFRNIKILIPATWKANNNSKIKQESYEKANVIVTDWYGAHGDDPYTLQYRGCGKEGKYIH
FTPNFLLNDNLTAGYGSRGRVFVHEWAHLRWGVFDEYNNDKPFYINGQNQIKVTRCSSDITGIFVCEKGP
CPQENCIISKLFKEGCTFIYNSTQNATASIMFMQSLSSVVEFCNASTHNQEAPNLQNQMCSLRSAWDVIT
DSADFHHSFPMNGTELPPPPTFSLVQAGDKVVCLVLDVSSKMAEADRLLQLQQAAEFYLMQIVEIHTFVG
IASFDSKGEIRAQLHQINSNDDRKLLVSYLPTTVSAKTDISICSGLKKGFEVVEKLNGKAYGSVMILVTS
GDDKLLGNCLPTVLSSGSTIHSIALGSSAAPNLEELSRLTGGLKFFVPDISNSNSMIDAFSRISSGTGDI
FQQHIQLESTGENVKPHHQLKNTVTVDNTVGNDTMFLVTWQASGPPEIILFDPDGRKYYTNNFITNLTFR
TASLWIPGTAKPGHWTYTLNNTHHSLQALKVTVTSRASNSAVPPATVEAFVERDSLHFPHPVMIYANVKQ
GFYPILNATVTATVEPETGDPVTLRLLDDGAGADVIKNDGIYSRYFFSFAANGRYSLKVHVNHSPSISTP
AHSIPGSHAMYVPGYTANGNIQMNAPRKSVGRNEEERKWGFSRVSSGGSFSVLGVPAGPHPDVFPPCKII
DLEAVKVEEELTLSWTAPGEDFDQGQATSYEIRMSKSLQNIQDDFNNAILVNTSKRNPQQAGIREIFTFS
PQISTNGPEHQPNGETHESHRIYVAIRAMDRNSLQSAVSNIAQAPLFIPPNSDPVPARDYLILKGVLTAM
GLIGIICLIIVVTHHTLSRKKRADKKENGTKLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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