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Report for CCDS11235.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11235.1 Public Homo sapiens 17 PIGS 24 110 108 CCDS HistoryNCBI Gene:94005Re-query CCDS DB by CCDS ID:11235.1See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11235.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000308360.8 ENSP00000309430.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000308360.8Link to Ensembl Protein Viewer:ENSP00000309430.7Re-query CCDS DB by Nucleotide ID:ENST00000308360Re-query CCDS DB by Protein ID:ENSP00000309430
Original member Current member NCBI NM_033198.4 NP_149975.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033198.4Link to Protein Sequence:NP_149975.1Re-query CCDS DB by Nucleotide ID:NM_033198Re-query CCDS DB by Protein ID:NP_149975Link to BLAST:NP_149975.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_149975.1 555 Q96S52-1 555 100% 0 0

Chromosomal Locations for CCDS 11235.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 28554220 28554495 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28554851 28555061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28556166 28556266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28556827 28556972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28558476 28558590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28560049 28560191 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28561422 28561629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28563431 28563522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28563818 28563907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28570852 28570963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28571049 28571188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 28571463 28571496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1668 nt):
ATGGCGGCCGCCGGGGCTGCGGCTACACACCTAGAGGTGGCCCGGGGCAAGCGCGCCGCCCTCTTCTTCG
CTGCGGTGGCCATCGTGCTGGGGCTACCGCTCTGGTGGAAGACCACGGAGACCTACCGGGCCTCGTTGCC
TTACTCCCAGATCAGTGGCCTGAATGCCCTTCAGCTCCGCCTCATGGTGCCTGTCACTGTCGTGTTTACG
CGGGAGTCAGTGCCCCTGGACGACCAGGAGAAGCTGCCCTTCACCGTTGTGCATGAAAGAGAGATTCCTC
TGAAATACAAAATGAAAATCAAATGCCGTTTCCAGAAGGCCTATCGGAGGGCTTTGGACCATGAGGAGGA
GGCCCTGTCATCGGGCAGTGTGCAAGAGGCAGAAGCCATGTTAGATGAGCCTCAGGAACAAGCGGAGGGC
TCCCTGACTGTGTACGTGATATCTGAACACTCCTCACTTCTTCCCCAGGACATGATGAGCTACATTGGGC
CCAAGAGGACAGCAGTGGTGCGGGGGATAATGCACCGGGAGGCCTTTAACATCATTGGCCGCCGCATAGT
CCAGGTGGCCCAGGCCATGTCTTTGACTGAGGATGTGCTTGCTGCTGCTCTGGCTGACCACCTTCCAGAG
GACAAGTGGAGCGCTGAGAAGAGGCGGCCTCTCAAGTCCAGCTTGGGCTATGAGATCACCTTCAGTTTAC
TCAACCCAGACCCCAAGTCCCATGATGTCTACTGGGACATTGAGGGGGCTGTCCGGCGCTATGTGCAACC
TTTCCTGAATGCCCTCGGTGCCGCTGGCAACTTCTCTGTGGACTCTCAGATTCTTTACTATGCAATGTTG
GGGGTGAATCCCCGCTTTGACTCAGCTTCCTCCAGCTACTATTTGGACATGCACAGCCTCCCCCATGTCA
TCAACCCAGTGGAGTCCCGGCTGGGATCCAGTGCTGCCTCCTTGTACCCTGTGCTCAACTTTCTACTCTA
CGTGCCTGAGCTTGCACACTCACCGCTGTACATTCAGGACAAGGATGGCGCTCCAGTGGCCACCAATGCC
TTCCATAGTCCCCGCTGGGGTGGCATTATGGTATATAATGTTGACTCCAAAACCTATAATGCCTCAGTGC
TGCCAGTGAGAGTCGAGGTGGACATGGTGCGAGTGATGGAGGTGTTCCTGGCACAGTTGCGGTTGCTCTT
TGGGATTGCTCAGCCCCAGCTGCCTCCAAAATGCCTGCTTTCAGGGCCTACGAGTGAAGGGCTAATGACC
TGGGAGCTAGACCGGCTGCTCTGGGCTCGGTCAGTGGAGAACCTGGCCACAGCCACCACCACCCTTACCT
CCCTGGCGCAGCTTCTGGGCAAGATCAGCAACATTGTCATTAAGGACGACGTGGCATCTGAGGTGTACAA
GGCTGTAGCTGCCGTCCAGAAGTCGGCAGAAGAGTTGGCGTCTGGGCACCTGGCATCTGCCTTTGTCGCC
AGCCAGGAAGCTGTGACATCCTCTGAGCTTGCCTTCTTTGACCCGTCACTCCTCCACCTCCTTTATTTCC
CTGATGACCAGAAGTTTGCCATCTACATCCCACTCTTCCTGCCTATGGCTGTGCCCATCCTCCTGTCCCT
GGTCAAGATCTTCCTGGAGACCCGCAAGTCCTGGAGAAAGCCTGAGAAGACAGACTGA

Translation (555 aa):
MAAAGAAATHLEVARGKRAALFFAAVAIVLGLPLWWKTTETYRASLPYSQISGLNALQLRLMVPVTVVFT
RESVPLDDQEKLPFTVVHEREIPLKYKMKIKCRFQKAYRRALDHEEEALSSGSVQEAEAMLDEPQEQAEG
SLTVYVISEHSSLLPQDMMSYIGPKRTAVVRGIMHREAFNIIGRRIVQVAQAMSLTEDVLAAALADHLPE
DKWSAEKRRPLKSSLGYEITFSLLNPDPKSHDVYWDIEGAVRRYVQPFLNALGAAGNFSVDSQILYYAML
GVNPRFDSASSSYYLDMHSLPHVINPVESRLGSSAASLYPVLNFLLYVPELAHSPLYIQDKDGAPVATNA
FHSPRWGGIMVYNVDSKTYNASVLPVRVEVDMVRVMEVFLAQLRLLFGIAQPQLPPKCLLSGPTSEGLMT
WELDRLLWARSVENLATATTTLTSLAQLLGKISNIVIKDDVASEVYKAVAAVQKSAEELASGHLASAFVA
SQEAVTSSELAFFDPSLLHLLYFPDDQKFAIYIPLFLPMAVPILLSLVKIFLETRKSWRKPEKTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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