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Report for CCDS1573.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1573.1 Public Homo sapiens 1 H2AC25 24 110 108 CCDS HistoryNCBI Gene:92815Re-query CCDS DB by CCDS ID:1573.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1573.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366695.3 ENSP00000355656.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000366695.3Link to Ensembl Protein Viewer:ENSP00000355656.2Re-query CCDS DB by Nucleotide ID:ENST00000366695Re-query CCDS DB by Protein ID:ENSP00000355656
Original member Current member EBI ENST00000689584.1 ENSP00000508783.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000689584.1Link to Ensembl Protein Viewer:ENSP00000508783.1Re-query CCDS DB by Nucleotide ID:ENST00000689584Re-query CCDS DB by Protein ID:ENSP00000508783
Original member Current member EBI ENST00000691624.1 ENSP00000510421.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000691624.1Link to Ensembl Protein Viewer:ENSP00000510421.1Re-query CCDS DB by Nucleotide ID:ENST00000691624Re-query CCDS DB by Protein ID:ENSP00000510421
Original member Current member NCBI NM_033445.3 NP_254280.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_033445.3Link to Protein Sequence:NP_254280.1Re-query CCDS DB by Nucleotide ID:NM_033445Re-query CCDS DB by Protein ID:NP_254280Link to BLAST:NP_254280.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_254280.1 130 Q7L7L0 130 100% 0 0

Chromosomal Locations for CCDS 1573.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 228457425 228457817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (393 nt):
ATGTCCGGTCGTGGTAAGCAGGGTGGCAAGGCGCGCGCCAAGGCTAAGTCGCGCTCGTCGCGCGCGGGGC
TGCAGTTCCCCGTGGGCCGCGTGCACCGGTTGCTCCGCAAGGGCAACTATTCGGAGCGCGTGGGCGCCGG
CGCCCCGGTCTATCTGGCCGCGGTGCTCGAGTACTTGACTGCCGAGATCCTGGAGCTTGCCGGCAACGCG
GCGCGCGACAACAAGAAGACGCGCATCATCCCGCGCCACCTGCAGCTGGCCATCCGCAACGACGAGGAGC
TCAACAAGCTGCTGGGCCGCGTGACCATCGCGCAGGGTGGCGTCCTGCCCAACATCCAGGCCGTACTGCT
GCCCAAGAAGACGGAGAGCCACCACAAGGCCAAGGGCAAGTGA

Translation (130 aa):
MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNA
ARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKKTESHHKAKGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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