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Report for CCDS5044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5044.1 Public Homo sapiens 6 MCHR2 24 110 108 CCDS HistoryNCBI Gene:84539Re-query CCDS DB by CCDS ID:5044.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5044.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000281806.7 ENSP00000281806.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000281806.7Link to Ensembl Protein Viewer:ENSP00000281806.2Re-query CCDS DB by Nucleotide ID:ENST00000281806Re-query CCDS DB by Protein ID:ENSP00000281806
Original member Current member EBI ENST00000369212.2 ENSP00000358214.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000369212.2Link to Ensembl Protein Viewer:ENSP00000358214.1Re-query CCDS DB by Nucleotide ID:ENST00000369212Re-query CCDS DB by Protein ID:ENSP00000358214
Original member Current member NCBI NM_001040179.2 NP_001035269.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001040179.2Link to Protein Sequence:NP_001035269.1Re-query CCDS DB by Nucleotide ID:NM_001040179Re-query CCDS DB by Protein ID:NP_001035269Link to BLAST:NP_001035269.1
Original member Current member NCBI NM_032503.3 NP_115892.2 Accepted alive Link to Nucleotide Sequence:NM_032503.3Link to Protein Sequence:NP_115892.2Re-query CCDS DB by Nucleotide ID:NM_032503Re-query CCDS DB by Protein ID:NP_115892Link to BLAST:NP_115892.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035269.1 340 Q969V1 340 100% 0 0
NP_115892.2 340 Q969V1 340 100% 0 0

Chromosomal Locations for CCDS 5044.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 99920940 99921255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99934398 99934517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99942949 99943143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99947762 99947971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99955966 99956147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1023 nt):
ATGAATCCATTTCATGCATCTTGTTGGAACACCTCTGCCGAACTTTTAAACAAATCCTGGAATAAAGAGT
TTGCTTATCAAACTGCCAGTGTGGTAGATACAGTCATCCTCCCTTCCATGATTGGGATTATCTGTTCAAC
AGGGCTGGTTGGCAACATCCTCATTGTATTCACTATAATAAGATCCAGGAAAAAAACAGTCCCTGACATC
TATATCTGCAACCTGGCTGTGGCTGATTTGGTCCACATAGTTGGAATGCCTTTTCTTATTCACCAATGGG
CCCGAGGGGGAGAGTGGGTGTTTGGGGGGCCTCTCTGCACCATCATCACATCCCTGGATACTTGTAACCA
ATTTGCCTGTAGTGCCATCATGACTGTAATGAGTGTGGACAGGTACTTTGCCCTCGTCCAACCATTTCGA
CTGACACGTTGGAGAACAAGGTACAAGACCATCCGGATCAATTTGGGCCTTTGGGCAGCTTCCTTTATCC
TGGCATTGCCTGTCTGGGTCTACTCGAAGGTCATCAAATTTAAAGACGGTGTTGAGAGTTGTGCTTTTGA
TTTGACATCCCCTGACGATGTACTCTGGTATACACTTTATTTGACGATAACAACTTTTTTTTTCCCTCTA
CCCTTGATTTTGGTGTGCTATATTTTAATTTTATGCTATACTTGGGAGATGTATCAACAGAATAAGGATG
CCAGATGCTGCAATCCCAGTGTACCAAAACAGAGAGTGATGAAGTTGACAAAGATGGTGCTGGTGCTGGT
GGTAGTCTTTATCCTGAGTGCTGCCCCTTATCATGTGATACAACTGGTGAACTTACAGATGGAACAGCCC
ACACTGGCCTTCTATGTGGGTTATTACCTCTCCATCTGTCTCAGCTATGCCAGCAGCAGCATTAACCCTT
TTCTCTACATCCTGCTGAGTGGAAATTTCCAGAAACGTCTGCCTCAAATCCAAAGAAGAGCGACTGAGAA
GGAAATCAACAATATGGGAAACACTCTGAAATCACACTTTTAG

Translation (340 aa):
MNPFHASCWNTSAELLNKSWNKEFAYQTASVVDTVILPSMIGIICSTGLVGNILIVFTIIRSRKKTVPDI
YICNLAVADLVHIVGMPFLIHQWARGGEWVFGGPLCTIITSLDTCNQFACSAIMTVMSVDRYFALVQPFR
LTRWRTRYKTIRINLGLWAASFILALPVWVYSKVIKFKDGVESCAFDLTSPDDVLWYTLYLTITTFFFPL
PLILVCYILILCYTWEMYQQNKDARCCNPSVPKQRVMKLTKMVLVLVVVFILSAAPYHVIQLVNLQMEQP
TLAFYVGYYLSICLSYASSSINPFLYILLSGNFQKRLPQIQRRATEKEINNMGNTLKSHF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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