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Report for CCDS47146.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47146.1 Public Homo sapiens 4 FHIP1A 24 110 108 CCDS HistoryNCBI Gene:729830Re-query CCDS DB by CCDS ID:47146.1See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47146.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000435205.6 ENSP00000413196.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000435205.6Link to Ensembl Protein Viewer:ENSP00000413196.1Re-query CCDS DB by Nucleotide ID:ENST00000435205Re-query CCDS DB by Protein ID:ENSP00000413196
Original member Current member EBI ENST00000505231.1 ENSP00000421580.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000505231.1Link to Ensembl Protein Viewer:ENSP00000421580.1Re-query CCDS DB by Nucleotide ID:ENST00000505231Re-query CCDS DB by Protein ID:ENSP00000421580
Original member Current member NCBI NM_001109977.3 NP_001103447.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001109977.3Link to Protein Sequence:NP_001103447.1Re-query CCDS DB by Nucleotide ID:NM_001109977Re-query CCDS DB by Protein ID:NP_001103447Link to BLAST:NP_001103447.1
Original member Current member NCBI NM_001348694.2 NP_001335623.1 Accepted alive Link to Nucleotide Sequence:NM_001348694.2Link to Protein Sequence:NP_001335623.1Re-query CCDS DB by Nucleotide ID:NM_001348694Re-query CCDS DB by Protein ID:NP_001335623Link to BLAST:NP_001335623.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001103447.1 1040 Q05DH4 1040 100% 0 0
NP_001335623.1 1040 Q05DH4 1040 100% 0 0

Chromosomal Locations for CCDS 47146.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 151566260 151566364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151577450 151578076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151586641 151586799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151588840 151588926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151629702 151629869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151638677 151638756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151646558 151646748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151649459 151650592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151656232 151656410 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151656760 151656898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 151662501 151662754 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3123 nt):
ATGATGTCATCGGTTTCGACAGAAAGCAAACTCCAGCAGGCTGTGAGCCTACAGGGAGTTGACCCAGAAA
CATGCATGATTGTATTTAAAAACCACTGGGCACAGGTTGTGAAAATCTTGGAGAAGCACGACCCCTTGAA
GAACACCCAGGCAAAATATGGGTCTATCCCTCCAGATGAGGCCAGTGCCGTGCAGAATTACGTAGAACAC
ATGCTCTTCTTGTTGATTGAAGAGCAAGCCAAAGATGCTGCAATGGGGCCGATTCTGGAATTTGTGGTCT
CTGAGAACATCATGGAGAAACTTTTCCTTTGGAGCTTGAGAAGGGAGTTTACTGATGAGACTAAAATTGA
GCAGCTAAAGATGTATGAGATGTTGGTCACCCAGTCGCACCAGCCTCTGCTGCACCACAAACCCATTCTG
AAGCCTCTGATGATGTTGCTGAGCTCTTGTTCAGGAACAACCACCCCCACTGTGGAGGAGAAGCTGGTTG
TCCTACTCAATCAGCTCTGTTCCATTCTTGCCAAAGATCCATCCATTTTAGAACTCTTCTTCCACACTAG
TGAAGACCAAGGCGCTGCCAACTTCCTCATCTTCTCCCTTCTGATTCCCTTCATTCACCGAGAGGGGTCA
GTAGGCCAGCAAGCTCGGGATGCATTGCTCTTCATCATGTCTCTTTCTGCTGAGAACACCATGGTGGCCC
ATCACATCGTGGAGAACACCTACTTTTGTCCAGTACTTGCAACTGGGCTCAGTGGTCTCTACTCTTCCCT
GCCTACAAAGCTAGAAGAGAAAGGCGAGGAATGGCACTGCCTTCTGAAAGATGACTGGCTTCTACTTCCT
TCTCTTGTCCAGTTCATGAACTCCCTGGAGTTTTGCAATGCAGTCATACAGGTGGCTCACCCCTTGATTC
GAAATCAGCTTGTCAATTACATTTACAATGGATTTTTGGTACCAGTCTTGGCTCCTGCTCTCCATAAGGT
GACTGTGGAAGAGGTCATGACCACAACTGCATATCTGGACCTTTTCCTGCGTAGCATCTCCGAGCCAGCA
CTACTTGAGATCTTCCTCCGTTTTATCCTATTGCACCAGCACGAGAATGTCCACATCCTAGACACTCTCA
CGAGTCGAATCAACACCCCGTTTCGGCTTTGTGTGGTGTCTCTGGCATTATTCAGAACTCTCATTGGTTT
ACATTGTGAAGATGTGATGTTACAGCTAGTTCTAAGGTATCTGATCCCCTGCAATCACATGATGCTGAGT
CAGAGGTGGGCTGTGAAGGAGAGAGACTGTTACTCTGTTTCTGCGGCCAAGCTTCTCGCCTTGACTCCTG
TCTGCTGCTCCAGCGGGATCACTCTGACGCTGGGGAACCAAGAGAGGGATTATATTCTCTGGTCAAAGTG
TATGCATGACACTTCAGGGCCTGTGGAGCGGCCATTCCCCGAAGCGTTCTCCGAGTCAGCCTGCATTGTG
GAGTATGGGAAAGCCCTGGACATCAGCTACCTGCAGTACCTGTGGGAGGCCCACACCAACATCCTCCGCT
GCATGAGGGACTGCCGTGTCTGGTCCGCCCTGTATGATGGCGACTCCCCCGACCCTGAGATGTTTCTCCA
GAGTCTGACGGAGGAGGGCAGTGTGAGCTCGGCCTGCCCTGTGTTCGGGCTCCCGCAACAACTCCCCAGG
AAGACAGGACCTCAGCTGGCTCCCAGAAAGGACAAGAGCCAGACAGAGCTGGAATGGGATGACAGCTATG
ACACTGGAATCTCCTCAGGGGCTGACGTGGGCTCCCCAGGGCCTTATGATGATCTGGAGGTTTCAGGCCC
CCCAGCACCCATTGATCCCCCCAAACACATCCAGGAGATGAAGAAGAATGCCCTCCTGCTCTTCAAAGGG
TCCTACATAGAAGAGTCGGACTTTCAGGATGATGTGATGGTGTACAGGCTGTGTGCTGAGAAGGACTCCG
AGGACATGAAGGATTCTCAGGAGGAAGCTGCTAGGCCACCAGCTGAAGCCCAGGCTGAAGTTCAGAGTGT
CCCCATCAACAACGGCCCCCTCCTCAGCACCCAGCCAGAGACAGATTCAGAGGAGGAGTGGAATAGGGAC
AATTCAGACCCGTTTCACAGTGAGCCCAAGGAGCCAAAGCAAGAGAGGGAACCTGAAGCAGCCCCAGAAT
CCAACTCAGAGTTAGCATCCCCTGCCCCTGAGGCAGAGCACAGCTCTAACCTGACAGCCGCCCACCCGGA
GAGCGAGGAGCTCATTGCCCAGTATGACCAAATCATTAAAGAGCTGGATTCCGGCGCCGAGGGCTTGATG
GAACAGAATTACCCCACACCTGATCCCTTGCTTCTCACTAAGGAGGAAGAAGGGAAGGAAGAGAGTAAAG
GAGAAAAGGAGAAGGAGGGGAAGAAGGAGCTAGAAGATGAGGAGGATGACTTTGACTCTTTTATAGCGGA
GATGCCTGCTGTAGAGACTGTGCCTTCCCCATTTGTGGGGAGAGATGAGGCTGCCTTTGCCAGTCGCCAT
CCCGTGAGGACTCAAAGCACCCCATTCACAGGCCCATTCATCAGCGTAGTCCTGTCAAAGCTGGAGAACA
TGCTGGAGAACTCTTTACATGTTAATTTGCTGCTTATCGGGATCATTACTCAGCTAGCCAGCTACCCCCA
GCCACTCCTGCGCTCCTTTCTGCTCAACACCAACATGGTCTTCCAGCCAAGCGTCCGCTCTCTCTATCAG
GTCCTTGCATCTGTGAAAAACAAGATTGAACAGTTTGCTTCTGTGGAGAGAGACTTCCCAGGGCTCCTCA
TTCAAGCTCAGCAGTACCTGCTCTTCCGTGTGGACATGTCTGATATGACCCCTGCAGCACTAACCAAAGA
TCCCATTCAGGAGGCTTCCAGGACAGGAAGTGGCAAGAACCTTTTGGATGGACCTCCAAGAGTGCTTCAG
CCCTTCCTGACCCACAGAACCAAGGTGGCTGAGGCACCCCCCAACCTGCCCCTGCCGGTGAGGAACCCCA
TGCTGGCTGCTGCCCTCTTCCCAGAGTTCCTGAAGGAGCTGGCGGCCTTGGCCCAGGAACACTCCATTCT
GTGCTACAAGATCTTGGGTGACTTTGAGGACTCCTGCTGTTAG

Translation (1040 aa):
MMSSVSTESKLQQAVSLQGVDPETCMIVFKNHWAQVVKILEKHDPLKNTQAKYGSIPPDEASAVQNYVEH
MLFLLIEEQAKDAAMGPILEFVVSENIMEKLFLWSLRREFTDETKIEQLKMYEMLVTQSHQPLLHHKPIL
KPLMMLLSSCSGTTTPTVEEKLVVLLNQLCSILAKDPSILELFFHTSEDQGAANFLIFSLLIPFIHREGS
VGQQARDALLFIMSLSAENTMVAHHIVENTYFCPVLATGLSGLYSSLPTKLEEKGEEWHCLLKDDWLLLP
SLVQFMNSLEFCNAVIQVAHPLIRNQLVNYIYNGFLVPVLAPALHKVTVEEVMTTTAYLDLFLRSISEPA
LLEIFLRFILLHQHENVHILDTLTSRINTPFRLCVVSLALFRTLIGLHCEDVMLQLVLRYLIPCNHMMLS
QRWAVKERDCYSVSAAKLLALTPVCCSSGITLTLGNQERDYILWSKCMHDTSGPVERPFPEAFSESACIV
EYGKALDISYLQYLWEAHTNILRCMRDCRVWSALYDGDSPDPEMFLQSLTEEGSVSSACPVFGLPQQLPR
KTGPQLAPRKDKSQTELEWDDSYDTGISSGADVGSPGPYDDLEVSGPPAPIDPPKHIQEMKKNALLLFKG
SYIEESDFQDDVMVYRLCAEKDSEDMKDSQEEAARPPAEAQAEVQSVPINNGPLLSTQPETDSEEEWNRD
NSDPFHSEPKEPKQEREPEAAPESNSELASPAPEAEHSSNLTAAHPESEELIAQYDQIIKELDSGAEGLM
EQNYPTPDPLLLTKEEEGKEESKGEKEKEGKKELEDEEDDFDSFIAEMPAVETVPSPFVGRDEAAFASRH
PVRTQSTPFTGPFISVVLSKLENMLENSLHVNLLLIGIITQLASYPQPLLRSFLLNTNMVFQPSVRSLYQ
VLASVKNKIEQFASVERDFPGLLIQAQQYLLFRVDMSDMTPAALTKDPIQEASRTGSGKNLLDGPPRVLQ
PFLTHRTKVAEAPPNLPLPVRNPMLAAALFPEFLKELAALAQEHSILCYKILGDFEDSCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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