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Report for CCDS9979.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9979.1 Public Homo sapiens 14 TNFAIP2 24 110 108 CCDS HistoryNCBI Gene:7127Re-query CCDS DB by CCDS ID:9979.1See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9979.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333007.8 ENSP00000332326.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000333007.8Link to Ensembl Protein Viewer:ENSP00000332326.1Re-query CCDS DB by Nucleotide ID:ENST00000333007Re-query CCDS DB by Protein ID:ENSP00000332326
Original member Current member EBI ENST00000560869.6 ENSP00000452634.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000560869.6Link to Ensembl Protein Viewer:ENSP00000452634.2Re-query CCDS DB by Nucleotide ID:ENST00000560869Re-query CCDS DB by Protein ID:ENSP00000452634
Original member Current member NCBI NM_006291.4 NP_006282.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006291.4Link to Protein Sequence:NP_006282.2Re-query CCDS DB by Nucleotide ID:NM_006291Re-query CCDS DB by Protein ID:NP_006282Link to BLAST:NP_006282.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_006282.2 654 Q03169 654 100% 0 0

Chromosomal Locations for CCDS 9979.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 103126458 103126692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103127005 103127629 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103129740 103129854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103130002 103130124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103130315 103130415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103131052 103131150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103131639 103131762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103132750 103132872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103133362 103133517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103133682 103133803 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 103135219 103135360 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1965 nt):
ATGTCGGAGGCCTCCTCTGAGGACCTGGTGCCACCCCTGGAGGCTGGGGCAGCCCCATATAGGGAGGAGG
AAGAGGCGGCGAAGAAGAAGAAGGAGAAGAAGAAGAAGTCCAAAGGCCTGGCCAATGTGTTCTGCGTCTT
CACCAAAGGGAAGAAGAAGAAGGGTCAGCCCAGCTCAGCGGAGCCCGAGGACGCAGCCGGGTCCAGGCAG
GGGCTGGATGGCCCGCCCCCCACAGTGGAGGAGCTGAAGGCGGCGCTGGAGCGCGGGCAGCTGGAGGCGG
CGCGGCCGCTGCTGGCGCTGGAGCGGGAGCTGGCGGCGGCGGCGGCGGCGGGCGGTGTGAGCGAGGAGGA
GCTGGTGCGGCGCCAGAGCAAGGTGGAGGCGCTGTACGAGCTGCTGCGCGACCAGGTGCTGGGCGTGCTG
CGGCGGCCGCTGGAGGCGCCGCCCGAGCGGCTGCGCCAGGCGCTGGCCGTGGTGGCGGAGCAGGAGCGCG
AGGACCGCCAGGCGGCGGCGGCGGGGCCGGGGACCTCGGGGCTGGCGGCCACGCGCCCGCGGCGCTGGCT
GCAGCTGTGGCGGCGCGGCGTGGCGGAGGCGGCCGAGGAGCGCATGGGCCAGCGGCCGGCCGCGGGCGCC
GAGGTCCCCGAGAGCGTCTTTCTGCACTTGGGCCGCACCATGAAGGAGGACCTGGAGGCCGTGGTGGAGC
GGCTGAAGCCGCTGTTCCCCGCCGAGTTCGGCGTCGTGGCGGCCTACGCCGAGAGCTACCACCAGCACTT
CGCGGCCCACCTGGCCGCCGTGGCGCAGTTCGAGCTGTGCGAGCGCGACACCTACATGCTGCTGCTCTGG
GTGCAGAACCTCTACCCCAATGACATCATCAACAGCCCCAAGCTGGTGGGTGAGCTGCAGGGTATGGGGC
TCGGGAGCCTCCTGCCCCCCAGGCAGATCCGACTGCTGGAGGCCACATTCCTGTCCAGTGAGGCGGCCAA
TGTGAGGGAGTTGATGGACCGAGCTCTGGAGCTAGAGGCACGGCGCTGGGCTGAGGATGTGCCTCCCCAG
AGGCTGGACGGCCACTGCCACAGCGAGCTGGCCATCGACATCATCCAGATCACCTCCCAGGCCCAGGCCA
AGGCCGAGAGCATCACGCTGGACTTGGGCTCACAGATAAAGCGGGTGCTGCTGGTGGAGCTGCCTGCGTT
CCTGAGGAGCTACCAGCGCGCCTTTAATGAATTTCTGGAGAGAGGCAAGCAGCTGACGAATTACAGGGCC
AATGTTATTGCCAACATCAACAACTGCCTGTCCTTCCGGATGTCCATGGAGCAGAATTGGCAGGTACCCC
AGGACACCCTGAGCCTCCTGCTGGGCCCCCTGGGTGAGCTCAAGAGCCACGGCTTTGACACCCTGCTCCA
GAACCTGCATGAGGACCTGAAGCCACTGTTCAAGAGGTTCACGCACACCCGCTGGGCGGCCCCTGTGGAG
ACCCTGGAAAACATCATCGCCACTGTAGACACGAGGCTGCCTGAGTTCTCAGAGCTGCAGGGCTGTTTCC
GGGAGGAGCTCATGGAGGCCTTGCACCTGCACCTGGTGAAGGAGTACATCATCCAACTCAGCAAGGGGCG
CCTGGTCCTCAAGACGGCCGAGCAGCAGCAGCAGCTGGCTGGGTACATCCTGGCCAATGCTGACACCATC
CAGCACTTCTGCACCCAGCACGGCTCCCCGGCGACCTGGCTGCAGCCTGCTCTCCCTACGCTGGCCGAGA
TCATTCGCCTGCAGGACCCCAGTGCCATCAAGATTGAGGTGGCCACTTATGCCACCTGCTACCCTGACTT
CAGCAAAGGCCACCTGAGCGCTATCCTGGCCATCAAGGGGAACCTATCCAACAGTGAGGTCAAGCGCATC
CGGAGCATCTTGGACGTCAGCATGGGGGCGCAGGAGCCCTCCCGGCCCCTATTTTCCCTTATAAAGGTTG
GTTAG

Translation (654 aa):
MSEASSEDLVPPLEAGAAPYREEEEAAKKKKEKKKKSKGLANVFCVFTKGKKKKGQPSSAEPEDAAGSRQ
GLDGPPPTVEELKAALERGQLEAARPLLALERELAAAAAAGGVSEEELVRRQSKVEALYELLRDQVLGVL
RRPLEAPPERLRQALAVVAEQEREDRQAAAAGPGTSGLAATRPRRWLQLWRRGVAEAAEERMGQRPAAGA
EVPESVFLHLGRTMKEDLEAVVERLKPLFPAEFGVVAAYAESYHQHFAAHLAAVAQFELCERDTYMLLLW
VQNLYPNDIINSPKLVGELQGMGLGSLLPPRQIRLLEATFLSSEAANVRELMDRALELEARRWAEDVPPQ
RLDGHCHSELAIDIIQITSQAQAKAESITLDLGSQIKRVLLVELPAFLRSYQRAFNEFLERGKQLTNYRA
NVIANINNCLSFRMSMEQNWQVPQDTLSLLLGPLGELKSHGFDTLLQNLHEDLKPLFKRFTHTRWAAPVE
TLENIIATVDTRLPEFSELQGCFREELMEALHLHLVKEYIIQLSKGRLVLKTAEQQQQLAGYILANADTI
QHFCTQHGSPATWLQPALPTLAEIIRLQDPSAIKIEVATYATCYPDFSKGHLSAILAIKGNLSNSEVKRI
RSILDVSMGAQEPSRPLFSLIKVG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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