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Report for CCDS13525.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13525.1 Public Homo sapiens 20 SRMS 24 110 108 CCDS HistoryNCBI Gene:6725Re-query CCDS DB by CCDS ID:13525.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13525.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000217188.2 ENSP00000217188.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000217188.2Link to Ensembl Protein Viewer:ENSP00000217188.1Re-query CCDS DB by Nucleotide ID:ENST00000217188Re-query CCDS DB by Protein ID:ENSP00000217188
Original member Current member NCBI NM_080823.4 NP_543013.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080823.4Link to Protein Sequence:NP_543013.1Re-query CCDS DB by Nucleotide ID:NM_080823Re-query CCDS DB by Protein ID:NP_543013Link to BLAST:NP_543013.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_543013.1 488 Q9H3Y6 488 100% 0 0

Chromosomal Locations for CCDS 13525.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 63540818 63540999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63541191 63541347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63541439 63541620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63542163 63542321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63542440 63542581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63543314 63543480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63544227 63544348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 63547108 63547463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1467 nt):
ATGGAGCCGTTCCTCAGGAGGCGGCTGGCCTTCCTGTCCTTCTTCTGGGACAAGATCTGGCCGGCGGGCG
GCGAGCCGGACCATGGCACCCCCGGGTCCCTGGACCCCAACACTGACCCAGTGCCCACGCTCCCCGCCGA
GCCTTGCAGCCCCTTCCCTCAGCTCTTCCTTGCGCTCTATGACTTCACGGCGCGGTGTGGCGGGGAGCTG
AGTGTCCGCCGCGGGGACAGGCTCTGTGCCCTCGAAGAGGGGGGCGGCTACATCTTCGCACGCAGGCTTT
CGGGCCAGCCCAGCGCCGGGCTCGTGCCCATCACCCACGTGGCCAAGGCTTCTCCTGAGACGCTCTCAGA
CCAACCCTGGTACTTTAGCGGGGTCAGTCGGACCCAGGCACAGCAGCTGCTCCTCTCCCCACCCAACGAA
CCAGGGGCCTTCCTCATCCGGCCCAGCGAGAGCAGCCTCGGGGGCTACTCACTGTCAGTCCGGGCCCAGG
CCAAGGTCTGCCACTACCGGGTCTCCATGGCAGCTGATGGCAGCCTCTACCTGCAGAAGGGACGGCTCTT
TCCCGGCCTGGAGGAGCTGCTCACCTACTACAAGGCCAACTGGAAGCTGATCCAGAACCCCCTGCTGCAG
CCCTGCATGCCCCAGAAGGCCCCGAGGCAGGACGTGTGGGAGCGGCCACACTCCGAATTCGCCCTTGGGA
GGAAGCTGGGTGAAGGCTACTTTGGGGAGGTGTGGGAAGGCCTGTGGCTGGGCTCCCTGCCCGTGGCGAT
CAAGGTCATCAAGTCAGCCAACATGAAGCTCACTGACCTCGCCAAGGAGATCCAGACACTGAAGGGCCTG
CGGCACGAGCGGCTCATCCGGCTGCACGCAGTGTGCTCGGGCGGGGAGCCTGTGTACATCGTCACGGAAC
TCATGCGCAAGGGGAACCTGCAGGCCTTCCTGGGCACCCCCGAGGGCCGGGCCCTGCGTCTGCCGCCACT
CCTGGGCTTTGCCTGCCAGGTGGCTGAGGGCATGAGCTACCTGGAGGAGCAGCGCGTTGTGCACCGGGAC
TTGGCCGCCCGGAACGTGCTCGTGGACGACGGCCTGGCCTGCAAGGTGGCTGACTTCGGCCTGGCCCGGC
TGCTCAAGGACGACATCTACTCCCCGAGCAGCAGCTCCAAGATCCCGGTCAAGTGGACAGCGCCTGAGGC
GGCCAATTATCGTGTCTTCTCCCAGAAGTCAGACGTCTGGTCCTTCGGCGTCCTGCTGCACGAGGTTTTC
ACCTATGGCCAGTGTCCCTATGAAGGGATGACCAACCACGAGACGCTGCAGCAGATCATGCGAGGGTACC
GGCTGCCGCGCCCGGCTGCCTGCCCGGCGGAGGTCTACGTGCTCATGCTGGAGTGCTGGAGGAGCAGCCC
CGAGGAACGGCCCTCCTTCGCCACGCTGCGGGAGAAGCTGCACGCCATCCACAGATGCCACCCCTGA

Translation (488 aa):
MEPFLRRRLAFLSFFWDKIWPAGGEPDHGTPGSLDPNTDPVPTLPAEPCSPFPQLFLALYDFTARCGGEL
SVRRGDRLCALEEGGGYIFARRLSGQPSAGLVPITHVAKASPETLSDQPWYFSGVSRTQAQQLLLSPPNE
PGAFLIRPSESSLGGYSLSVRAQAKVCHYRVSMAADGSLYLQKGRLFPGLEELLTYYKANWKLIQNPLLQ
PCMPQKAPRQDVWERPHSEFALGRKLGEGYFGEVWEGLWLGSLPVAIKVIKSANMKLTDLAKEIQTLKGL
RHERLIRLHAVCSGGEPVYIVTELMRKGNLQAFLGTPEGRALRLPPLLGFACQVAEGMSYLEEQRVVHRD
LAARNVLVDDGLACKVADFGLARLLKDDIYSPSSSSKIPVKWTAPEAANYRVFSQKSDVWSFGVLLHEVF
TYGQCPYEGMTNHETLQQIMRGYRLPRPAACPAEVYVLMLECWRSSPEERPSFATLREKLHAIHRCHP


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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