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Report for CCDS5052.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5052.1 Public Homo sapiens 6 POPDC3 24 110 108 CCDS HistoryNCBI Gene:64208Re-query CCDS DB by CCDS ID:5052.1See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5052.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000254765.4 ENSP00000254765.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000254765.4Link to Ensembl Protein Viewer:ENSP00000254765.3Re-query CCDS DB by Nucleotide ID:ENST00000254765Re-query CCDS DB by Protein ID:ENSP00000254765
Original member Current member NCBI NM_022361.5 NP_071756.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_022361.5Link to Protein Sequence:NP_071756.2Re-query CCDS DB by Nucleotide ID:NM_022361Re-query CCDS DB by Protein ID:NP_071756Link to BLAST:NP_071756.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071756.2 291 Q9HBV1 291 100% 0 0

Chromosomal Locations for CCDS 5052.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 105158470 105158751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 105159711 105159819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 105161425 105161909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (876 nt):
ATGGAAAGAAATTCAAGTTTATGGAAGAACCTAATAGATGAACACCCAGTCTGCACAACCTGGAAGCAAG
AGGCCGAAGGAGCCATTTATCATCTTGCCAGTATTTTATTTGTAGTAGGTTTCATGGGTGGCAGTGGATT
CTTCGGGCTCCTTTATGTCTTCAGTTTGCTGGGGTTGGGTTTTCTCTGTTCTGCTGTCTGGGCTTGGGTA
GATGTCTGTGCAGCTGACATATTTTCCTGGAATTTTGTACTGTTTGTCATCTGCTTCATGCAATTTGTTC
ATATTGCATATCAAGTTCGCAGCATAACCTTTGCCCGAGAATTCCAAGTGTTGTACAGCTCCCTTTTCCA
GCCCCTGGGGATCTCTTTGCCTGTCTTCAGAACGATTGCTTTGAGCTCTGAAGTGGTTACTTTGGAAAAG
GAACACTGTTATGCCATGCAGGGGAAAACTTCCATTGATAAACTCTCCTTGCTTGTTTCAGGAAGGATCA
GAGTGACAGTTGATGGCGAATTTCTGCATTACATTTTCCCCCTTCAGTTCCTGGATTCTCCTGAGTGGGA
TTCACTGAGACCCACAGAGGAAGGCATTTTTCAGGTAACCCTCACTGCAGAAACTGATTGTCGATATGTG
TCTTGGAGGAGAAAGAAATTATATCTGCTCTTTGCTCAGCATCGCTACATCTCCCGCCTTTTTTCAGTGC
TAATTGGCAGTGACATTGCAGATAAACTCTATGCCTTGAATGACAGGGTATATATAGGAAAAAGATATCA
CTATGATATTCGGCTACCCAACTTCTATCAAATGTCAACTCCAGAAATACGCAGATCACCCCTGACACAA
CATTTTCAGAATTCCAGACGATACTGTGATAAATGA

Translation (291 aa):
MERNSSLWKNLIDEHPVCTTWKQEAEGAIYHLASILFVVGFMGGSGFFGLLYVFSLLGLGFLCSAVWAWV
DVCAADIFSWNFVLFVICFMQFVHIAYQVRSITFAREFQVLYSSLFQPLGISLPVFRTIALSSEVVTLEK
EHCYAMQGKTSIDKLSLLVSGRIRVTVDGEFLHYIFPLQFLDSPEWDSLRPTEEGIFQVTLTAETDCRYV
SWRRKKLYLLFAQHRYISRLFSVLIGSDIADKLYALNDRVYIGKRYHYDIRLPNFYQMSTPEIRRSPLTQ
HFQNSRRYCDK


Links Key
 Links to:   History report
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  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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