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Report for CCDS8435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8435.1 Public Homo sapiens 11 SC5D 24 110 108 CCDS HistoryNCBI Gene:6309Re-query CCDS DB by CCDS ID:8435.1See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8435.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000264027.9 ENSP00000264027.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000264027.9Link to Ensembl Protein Viewer:ENSP00000264027.4Re-query CCDS DB by Nucleotide ID:ENST00000264027Re-query CCDS DB by Protein ID:ENSP00000264027
Original member Current member EBI ENST00000392789.2 ENSP00000376539.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392789.2Link to Ensembl Protein Viewer:ENSP00000376539.2Re-query CCDS DB by Nucleotide ID:ENST00000392789Re-query CCDS DB by Protein ID:ENSP00000376539
Original member Current member NCBI NM_001024956.3 NP_001020127.1 Accepted alive Link to Nucleotide Sequence:NM_001024956.3Link to Protein Sequence:NP_001020127.1Re-query CCDS DB by Nucleotide ID:NM_001024956Re-query CCDS DB by Protein ID:NP_001020127Link to BLAST:NP_001020127.1
Original member Current member NCBI NM_006918.5 NP_008849.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006918.5Link to Protein Sequence:NP_008849.2Re-query CCDS DB by Nucleotide ID:NM_006918Re-query CCDS DB by Protein ID:NP_008849Link to BLAST:NP_008849.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001020127.1 299 O75845 299 100% 0 0
NP_008849.2 299 O75845 299 100% 0 0

Chromosomal Locations for CCDS 8435.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 121303376 121303585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121304361 121304493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121306386 121306486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 121307057 121307512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (900 nt):
ATGGATCTTGTACTCCGTGTTGCAGATTACTATTTTTTTACACCATACGTGTATCCAGCCACATGGCCAG
AAGATGACATCTTCCGACAAGCTATTAGTCTTCTGATTGTAACAAATGTTGGTGCTTACATCCTTTATTT
CTTCTGTGCAACACTGAGCTATTATTTTGTCTTCGATCATGCATTAATGAAACATCCACAATTTTTAAAG
AATCAAGTCCGTCGAGAGATTAAGTTTACTGTCCAGGCATTGCCATGGATAAGTATTCTTACTGTTGCAC
TGTTCTTGCTGGAGATAAGAGGTTACAGCAAATTACATGATGACCTAGGAGAGTTTCCATATGGATTGTT
TGAACTTGTCGTTAGTATAATATCTTTCCTCTTTTTCACTGACATGTTCATCTACTGGATTCACAGAGGC
CTTCATCATAGACTGGTATATAAGCGCCTACATAAACCTCACCATATTTGGAAGATTCCTACTCCATTTG
CAAGTCATGCTTTTCACCCTATTGATGGCTTTCTTCAGAGTCTACCTTACCATATATACCCTTTTATCTT
TCCATTACACAAGGTGGTTTATTTAAGTCTGTACATCTTGGTTAATATCTGGACAATTTCCATTCATGAC
GGTGATTTTCGTGTCCCCCAAATCTTACAGCCATTTATTAATGGCTCAGCTCATCATACAGACCACCATA
TGTTCTTTGACTATAATTATGGACAATATTTCACTTTGTGGGATAGGATTGGCGGCTCATTCAAAAATCC
TTCATCCTTTGAGGGGAAGGGACCGCTCAGTTATGTGAAGGAGATGACAGAGGGAAAGCGCAGCAGCCAT
TCAGGAAATGGCTGTAAGAATGAAAAATTATTCAATGGAGAGTTTACAAAGACTGAATAG

Translation (299 aa):
MDLVLRVADYYFFTPYVYPATWPEDDIFRQAISLLIVTNVGAYILYFFCATLSYYFVFDHALMKHPQFLK
NQVRREIKFTVQALPWISILTVALFLLEIRGYSKLHDDLGEFPYGLFELVVSIISFLFFTDMFIYWIHRG
LHHRLVYKRLHKPHHIWKIPTPFASHAFHPIDGFLQSLPYHIYPFIFPLHKVVYLSLYILVNIWTISIHD
GDFRVPQILQPFINGSAHHTDHHMFFDYNYGQYFTLWDRIGGSFKNPSSFEGKGPLSYVKEMTEGKRSSH
SGNGCKNEKLFNGEFTKTE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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