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Report for CCDS1410.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1410.1 Public Homo sapiens 1 LAD1 24 110 108 CCDS HistoryNCBI Gene:3898Re-query CCDS DB by CCDS ID:1410.1See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1410.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000391967.7 ENSP00000375829.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000391967.7Link to Ensembl Protein Viewer:ENSP00000375829.2Re-query CCDS DB by Nucleotide ID:ENST00000391967Re-query CCDS DB by Protein ID:ENSP00000375829
Original member Current member NCBI NM_005558.4 NP_005549.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005558.4Link to Protein Sequence:NP_005549.2Re-query CCDS DB by Nucleotide ID:NM_005558Re-query CCDS DB by Protein ID:NP_005549Link to BLAST:NP_005549.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005549.2 517 O00515 517 100% 0 0

Chromosomal Locations for CCDS 1410.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 201381888 201381893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201382252 201382326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201382653 201382739 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201383074 201383211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201383317 201383389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201384792 201384835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201385701 201385805 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201386335 201387178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201389160 201389303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 201399269 201399306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGGCTGTCAGCAGGAAGGACTGGTCCGCGCTGTCCAGCCTTGCCCGGCAGAGGACTCTGGAGGATGAGG
AGGAACAGGAGCGCGAGCGCAGGCGGCGGCACCGCAACCTGAGCTCCACCACGGACGATGAGGCTCCCAG
GCTCAGCCAGAATGGAGACCGGCAGGCCTCTGCTTCTGAGAGACTACCGAGCGTGGAAGAAGCAGAGGTG
CCCAAGCCACTGCCCCCAGCCTCCAAAGATGAGGACGAGGACATCCAGAGCATCCTCAGAACACGGCAGG
AGCGGAGGCAGAGGCGGCAGGTGGTGGAGGCTGCACAGGCCCCCATCCAGGAGAGGCTGGAGGCAGAGGA
GGGGAGGAACAGCTTGAGCCCTGTGCAGGCCACACAGAAACCCCTAGTCTCCAAGAAGGAACTGGAAATC
CCACCTCGCCGGAGACTGAGTCGGGAACAGCGGGGCCCCTGGGCCCTGGAGGAGGAGAGCTTGGTGGGCA
GGGAGCCAGAAGAGAGGAAGAAAGGGGTTCCAGAAAAGTCCCCAGTCTTGGAGAAGTCCTCCATGCCAAA
GAAGACGGCACCTGAAAAGAGCCTGGTCTCCGATAAAACCTCCATCTCTGAGAAGGTGCTGGCCTCAGAG
AAGACATCTCTATCAGAGAAGATAGCAGTGTCAGAGAAAAGAAACAGCTCAGAGAAGAAGTCTGTTCTAG
AAAAAACCAGTGTCTCTGAGAAGTCGCTGGCCCCAGGGATGGCACTGGGCTCAGGAAGGAGGCTGGTGTC
TGAGAAAGCTTCCATCTTTGAGAAGGCACTGGCCTCAGAGAAGAGCCCAACTGCAGATGCTAAGCCGGCC
CCAAAGAGGGCCACAGCCTCAGAGCAGCCCCTGGCGCAGGAGCCGCCAGCCTCTGGGGGAAGCCCAGCCA
CCACCAAGGAGCAGAGAGGAAGGGCCCTCCCTGGGAAGAACCTGCCCTCTTTGGCAAAGCAGGGGGCTTC
AGACCCTCCGACTGTGGCCTCCCGCCTCCCACCCGTCACACTCCAGGTGAAAATCCCCAGCAAGGAGGAA
GAGGCAGATATGTCCTCACCCACACAGCGAACCTACAGCAGCTCCCTCAAACGCTCCAGCCCCAGGACCA
TCTCCTTTCGGATGAAACCCAAGAAAGAAAACTCGGAAACAACCCTAACTCGCAGTGCCAGCATGAAGCT
CCCAGACAACACAGTGAAGTTGGGAGAGAAGCTGGAGAGATACCACACGGCCATACGGAGATCAGAATCT
GTCAAGTCTCGGGGTCTGCCTTGCACTGAGTTATTCGTGGCTCCTGTGGGTGTAGCCAGCAAGCGCCACC
TCTTTGAGAAGGAACTGGCGGGCCAGAGCCGAGCAGAACCAGCCTCCAGCCGGAAGGAGAACTTGAGGCT
CTCAGGGGTTGTGACATCAAGGCTCAACCTGTGGATCAGCAGGACCCAGGAATCTGGAGATCAGGACCCC
CAGGAGGCACAGAAAGCATCATCTGCAACCGAGAGGACTCAGTGGGGACAGAAATCTGACTCCTCGCTGG
ACGCTGAGGTGTGA

Translation (517 aa):
MAVSRKDWSALSSLARQRTLEDEEEQERERRRRHRNLSSTTDDEAPRLSQNGDRQASASERLPSVEEAEV
PKPLPPASKDEDEDIQSILRTRQERRQRRQVVEAAQAPIQERLEAEEGRNSLSPVQATQKPLVSKKELEI
PPRRRLSREQRGPWALEEESLVGREPEERKKGVPEKSPVLEKSSMPKKTAPEKSLVSDKTSISEKVLASE
KTSLSEKIAVSEKRNSSEKKSVLEKTSVSEKSLAPGMALGSGRRLVSEKASIFEKALASEKSPTADAKPA
PKRATASEQPLAQEPPASGGSPATTKEQRGRALPGKNLPSLAKQGASDPPTVASRLPPVTLQVKIPSKEE
EADMSSPTQRTYSSSLKRSSPRTISFRMKPKKENSETTLTRSASMKLPDNTVKLGEKLERYHTAIRRSES
VKSRGLPCTELFVAPVGVASKRHLFEKELAGQSRAEPASSRKENLRLSGVVTSRLNLWISRTQESGDQDP
QEAQKASSATERTQWGQKSDSSLDAEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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