NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9421.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9421.1 Public Homo sapiens 13 KPNA3 24 110 108 CCDS HistoryNCBI Gene:3839Re-query CCDS DB by CCDS ID:9421.1See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9421.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261667.8 ENSP00000261667.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261667.8Link to Ensembl Protein Viewer:ENSP00000261667.3Re-query CCDS DB by Nucleotide ID:ENST00000261667Re-query CCDS DB by Protein ID:ENSP00000261667
Original member Current member NCBI NM_002267.4 NP_002258.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002267.4Link to Protein Sequence:NP_002258.2Re-query CCDS DB by Nucleotide ID:NM_002267Re-query CCDS DB by Protein ID:NP_002258Link to BLAST:NP_002258.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002258.2 521 O00505 521 100% 0 0

Chromosomal Locations for CCDS 9421.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 49701800 49701898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49702386 49702480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49705621 49705783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49706098 49706169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49706268 49706372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49709572 49709700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49710891 49711022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49719775 49719819 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49721955 49722124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49722477 49722563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49725416 49725501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49732371 49732466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49732605 49732657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49732747 49732776 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49732957 49733046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49746949 49746993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 49792438 49792506 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1566 nt):
ATGGCCGAGAACCCCAGCTTGGAGAACCACCGCATCAAGAGCTTCAAGAACAAGGGCCGCGATGTGGAAA
CAATGCGAAGACATAGAAATGAAGTGACAGTGGAACTGCGGAAGAACAAAAGAGATGAACACTTATTGAA
AAAGAGAAATGTTCCCCAAGAAGAAAGTCTAGAAGATTCAGATGTTGATGCTGATTTTAAAGCACAAAAT
GTAACCCTAGAAGCTATATTGCAGAATGCCACAAGTGATAACCCAGTGGTCCAATTGAGTGCTGTCCAGG
CAGCAAGAAAACTGTTATCCAGTGACAGAAATCCACCGATTGATGACTTAATAAAATCTGGGATTTTACC
AATTCTAGTCAAATGTCTAGAAAGGGATGATAATCCTTCATTACAGTTTGAAGCTGCTTGGGCATTAACT
AACATAGCATCAGGAACTTCTGCACAGACTCAAGCTGTTGTGCAGTCTAATGCAGTACCTCTTTTTCTGA
GACTTCTTCGTTCACCACATCAGAATGTTTGTGAACAAGCAGTATGGGCTTTGGGAAACATTATAGGTGA
TGGTCCTCAATGTAGAGATTATGTCATATCACTGGGAGTTGTCAAACCTCTTCTGTCCTTCATCAGTCCC
TCCATCCCCATCACCTTCCTTCGGAACGTCACATGGGTCATTGTCAATCTCTGCAGGAATAAGGATCCCC
CGCCGCCTATGGAGACAGTTCAGGAGATTTTGCCAGCTTTATGTGTCCTCATATACCATACAGATATAAA
CATTCTTGTAGACACTGTTTGGGCTCTGTCATACTTGACAGATGGAGGTAATGAACAGATACAGATGGTT
ATTGATTCAGGAGTTGTGCCCTTTCTTGTGCCCCTTCTGAGCCATCAGGAAGTCAAAGTTCAAACAGCAG
CCCTCAGAGCAGTTGGCAACATAGTGACTGGCACCGACGAGCAGACCCAGGTTGTTCTCAATTGTGATGT
CCTGTCACACTTCCCAAATCTCTTATCACACCCAAAAGAGAAGATAAATAAGGAAGCAGTGTGGTTCCTT
TCCAACATAACAGCAGGCAACCAGCAACAAGTTCAAGCTGTAATAGATGCTGGATTAATTCCTATGATAA
TTCATCAGCTTGCTAAGGGGGACTTTGGAACACAAAAAGAAGCTGCTTGGGCAATCAGCAACTTAACAAT
AAGTGGCAGAAAAGATCAGGTTGAGTACCTTGTACAGCAGAATGTAATACCACCGTTCTGTAATTTACTG
TCAGTGAAAGATTCTCAAGTGGTTCAGGTGGTTCTAGATGGTCTAAAAAACATTCTGATAATGGCCGGTG
ATGAAGCAAGCACAATAGCTGAAATAATAGAGGAATGTGGAGGTTTGGAGAAAATTGAAGTTTTACAGCA
ACATGAAAATGAAGACATATATAAATTAGCATTTGAAATCATAGATCAGTATTTCTCTGGTGATGATATT
GATGAAGATCCCTGCCTCATTCCTGAAGCAACACAAGGAGGTACCTACAATTTTGATCCAACAGCCAACC
TTCAAACAAAAGAATTTAATTTTTAA

Translation (521 aa):
MAENPSLENHRIKSFKNKGRDVETMRRHRNEVTVELRKNKRDEHLLKKRNVPQEESLEDSDVDADFKAQN
VTLEAILQNATSDNPVVQLSAVQAARKLLSSDRNPPIDDLIKSGILPILVKCLERDDNPSLQFEAAWALT
NIASGTSAQTQAVVQSNAVPLFLRLLRSPHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSFISP
SIPITFLRNVTWVIVNLCRNKDPPPPMETVQEILPALCVLIYHTDINILVDTVWALSYLTDGGNEQIQMV
IDSGVVPFLVPLLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLNCDVLSHFPNLLSHPKEKINKEAVWFL
SNITAGNQQQVQAVIDAGLIPMIIHQLAKGDFGTQKEAAWAISNLTISGRKDQVEYLVQQNVIPPFCNLL
SVKDSQVVQVVLDGLKNILIMAGDEASTIAEIIEECGGLEKIEVLQQHENEDIYKLAFEIIDQYFSGDDI
DEDPCLIPEATQGGTYNFDPTANLQTKEFNF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH