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Report for CCDS33755.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
33755.2 Public Homo sapiens 3 IHO1 24 110 108 CCDS HistoryNCBI Gene:339834Re-query CCDS DB by CCDS ID:33755.2See the combined annotation on chromosome 3 in Sequence Viewer

Public Note for CCDS 33755.1
The coding region has been updated to extend the N-terminus to one that is more supported by available transcript and homology data.

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 33755.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000296449.9 ENSP00000296449.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000296449.9Link to Ensembl Protein Viewer:ENSP00000296449.5Re-query CCDS DB by Nucleotide ID:ENST00000296449Re-query CCDS DB by Protein ID:ENSP00000296449
Original member Current member EBI ENST00000438782.5 ENSP00000391788.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000438782.5Link to Ensembl Protein Viewer:ENSP00000391788.1Re-query CCDS DB by Nucleotide ID:ENST00000438782Re-query CCDS DB by Protein ID:ENSP00000391788
Original member Current member EBI ENST00000452691.7 ENSP00000407837.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000452691.7Link to Ensembl Protein Viewer:ENSP00000407837.2Re-query CCDS DB by Nucleotide ID:ENST00000452691Re-query CCDS DB by Protein ID:ENSP00000407837
Original member Current member NCBI NM_001135197.2 NP_001128669.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001135197.2Link to Protein Sequence:NP_001128669.1Re-query CCDS DB by Nucleotide ID:NM_001135197Re-query CCDS DB by Protein ID:NP_001128669Link to BLAST:NP_001128669.1
Original member Current member NCBI NM_178173.4 NP_835467.2 Accepted alive Link to Nucleotide Sequence:NM_178173.4Link to Protein Sequence:NP_835467.2Re-query CCDS DB by Nucleotide ID:NM_178173Re-query CCDS DB by Protein ID:NP_835467Link to BLAST:NP_835467.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128669.1 594 Q8IYA8-1 594 100% 0 0
NP_835467.2 594 Q8IYA8-1 594 100% 0 0

Chromosomal Locations for CCDS 33755.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 49211781 49211836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49236548 49236722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49241226 49241389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49244404 49244452 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49244646 49244733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49255390 49255493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 49256134 49257282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1785 nt):
ATGAATTTTAATGTCTGGAATATCAAAGAGATGCTCAGTATTCCTTCAGGCTCTGGGAACAAGAAGTCAT
CCAACTGGAATAATAATCAAAATGATTATTCCAGTCTCAGTGATTCCCAGTTCCTCTTTGGATCTCAGTT
CTGTCCAGAAAATTCAGAAACCCTATCAGCACCCTTGGACTTTGGTGCCCACTTGAGACATTCAAAACAG
TCACAACAGAACTATCTGGAGGGTGAACCTAGCATTTTCACAAAGTACCAGACAAAGCCCCAGCTGTTCG
GAGGAGATATAAAAGATGGAGGTTTATTTCCTCCTCCTTTGTCAGTTGGAAAATCAAAAGGCCTCTTGGA
ACAGTTTGAGGAGAAAAAGAAAAGGGCAAAAGACAAATGTGACAGTGAGACTCTATACAACTTTGTTTCT
AATGTTAGAGAAAGCATTCTCAGGTTGCAGACGTCTGTGGAAAAGTCTGAGGACCATCTCAGTTCAAGAA
GCCAATCTATTTTGGATTCTTTGGAGACTGTGGCCAAGACATTACAAGAGACTATACAGGCCCAGAATGA
CCTGGTGTTTGAGGCAGTCCAGGACAAAGGCAACATGGAGCAGGCCATCCTTGAGATGAAGAAAAGATTT
GAAGCTAGACAAGGAGAGTTTATAGAAATGAAGTCCAACCTGAAGCACCTTGAAGTTTTAGTTGCTCAGC
AGAGTCAGGAATTCCAGCAGCTGTGTGAGCAGCTAGGCCAGCTGAATGTGCCCAGTGTCCTAGCAGAGCT
GAAGAGATTGATCTCAGTGCCTCCAGTGAAAGACAGTGCTTCTCAGACGTCGCCACCTTTGGCCCAGAGC
CTCAATCTCACCAGGCAGGAAAAATACACCTCTGAGAAACCAGTTTTATGGCAGGCCCAGGCCCTCCCTG
CTGCATGGAATCCTGGTATGGGCTCCCTACAGCCTGGAGAATTTGATGTCTGGGGTGAAGGAGCAAAGAA
TGATGATCTCCAAGAAGAGGCTGCACTGCCAGCATTTGGGTCCCATGAAAGAAATAGGCATGTAAAGGAC
AAGGTGGTGCAGACTAACTGCAAGAACTGGGCTGTTACTAAAACAGGTGCCAAGAACCATGGTTCCAGCG
TCCCAGGCCATAAGATTCCCAGTGACAGGGACCTGGTTTCCCAAGGAGCCTCACAGCTCACATCATTGGA
GATAAACTTTTCAACCAGCATTAAGAATGCCTGCCAAAAATATCAAGCCCAAAGTATGTTTTTGTGTGAC
CCACGTGAACATTTGGTGATTAAACAGAAAGATGGGACTGTAGAAATGCGGGGGAAAGACAAGAAGCAGC
AGCCCAGGAAGGCCCACAGGGCCCACAGAGGCAGGCTCATAGCCAGCAAGCAAAAACAAATCCCAATCCA
GACCTGTAAATTCAATTCCAAATATCAGAGTCCTCAGCCTGCAATTTCTGTCCCTCAAAGCCCCTTCCTG
GGGCAGCAGGAACCCCGTGCTCAGCCTCTGCATCTGCAGTGTCCCAGGAGCCCCAGAAAACCAGTCTGCC
CTATTCTGGGAGGAACAGTCATGCCCAATAAGACAGTAAGGGCAGTGCAGGGAAGACTCTTGCAGCTCAG
CAGGTGCTCTTCCCAAGACAACTGGCTACTTTCCAGCAGTTCCCAGGGGGACCACCAGATGAGCTGGTTC
AGTGACCTCAATCTCGGATGTTCAGAGACCCCTCTATGCAAGGAGGCAGGAAAGAATTTGCTCTATGACC
TGGGTTTTGATAGCAGTGATGATGATGGCTTCTGA

Translation (594 aa):
MNFNVWNIKEMLSIPSGSGNKKSSNWNNNQNDYSSLSDSQFLFGSQFCPENSETLSAPLDFGAHLRHSKQ
SQQNYLEGEPSIFTKYQTKPQLFGGDIKDGGLFPPPLSVGKSKGLLEQFEEKKKRAKDKCDSETLYNFVS
NVRESILRLQTSVEKSEDHLSSRSQSILDSLETVAKTLQETIQAQNDLVFEAVQDKGNMEQAILEMKKRF
EARQGEFIEMKSNLKHLEVLVAQQSQEFQQLCEQLGQLNVPSVLAELKRLISVPPVKDSASQTSPPLAQS
LNLTRQEKYTSEKPVLWQAQALPAAWNPGMGSLQPGEFDVWGEGAKNDDLQEEAALPAFGSHERNRHVKD
KVVQTNCKNWAVTKTGAKNHGSSVPGHKIPSDRDLVSQGASQLTSLEINFSTSIKNACQKYQAQSMFLCD
PREHLVIKQKDGTVEMRGKDKKQQPRKAHRAHRGRLIASKQKQIPIQTCKFNSKYQSPQPAISVPQSPFL
GQQEPRAQPLHLQCPRSPRKPVCPILGGTVMPNKTVRAVQGRLLQLSRCSSQDNWLLSSSSQGDHQMSWF
SDLNLGCSETPLCKEAGKNLLYDLGFDSSDDDGF


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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