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Report for CCDS42102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42102.1 Public Homo sapiens 16 NPW 24 110 108 CCDS HistoryNCBI Gene:283869Re-query CCDS DB by CCDS ID:42102.1See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)


Attributes
Non-AUG initiation codon

Sequence IDs included in CCDS 42102.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000566435.4 ENSP00000456974.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000566435.4Link to Ensembl Protein Viewer:ENSP00000456974.3Re-query CCDS DB by Nucleotide ID:ENST00000566435Re-query CCDS DB by Protein ID:ENSP00000456974
Original member Current member NCBI NM_001099456.3 NP_001092926.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099456.3Link to Protein Sequence:NP_001092926.2Re-query CCDS DB by Nucleotide ID:NM_001099456Re-query CCDS DB by Protein ID:NP_001092926Link to BLAST:NP_001092926.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001092926.2 165 Q8N729 165 100% 0 0

Chromosomal Locations for CCDS 42102.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 16 (NC_000016.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 2019902 2020312 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 2020533 2020619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol L (codon CTG) with M at amino acid position 1

Nucleotide Sequence (498 nt):
CTGGCGTGGCGCCCAGGGGAGCGGGGGGCTCCCGCGAGCCGGCCGCGGCTGGCACTGCTGCTGCTTCTGC
TCCTGCTGCCGCTGCCCTCCGGCGCGTGGTACAAGCACGTGGCGAGTCCCCGCTACCACACGGTGGGCCG
CGCCGCTGGCCTGCTCATGGGGCTGCGTCGCTCACCCTATCTGTGGCGCCGCGCGCTGCGCGCGGCCGCC
GGGCCCCTGGCCAGGGACACCCTCTCCCCCGAACCCGCAGCCCGCGAGGCTCCTCTCCTGCTGCCCTCGT
GGGTTCAGGAGCTGTGGGAGACGCGACGCAGGAGCTCCCAGGCAGGGATCCCCGTCCGTGCGCCCCGGAG
CCCGCGCGCCCCAGAGCCTGCGCTGGAACCGGAGTCCCTGGACTTCAGCGGAGCTGGCCAGAGACTTCGG
AGAGACGTCTCCCGCCCAGCGGTGGACCCCGCAGCAAACCGCCTTGGCCTGCCCTGCCTGGCCCCCGGAC
CGTTCTGA

Translation (165 aa):
MAWRPGERGAPASRPRLALLLLLLLLPLPSGAWYKHVASPRYHTVGRAAGLLMGLRRSPYLWRRALRAAA
GPLARDTLSPEPAAREAPLLLPSWVQELWETRRRSSQAGIPVRAPRSPRAPEPALEPESLDFSGAGQRLR
RDVSRPAVDPAANRLGLPCLAPGPF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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