NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS43627.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43627.1 Public Homo sapiens 7 POLR2J2 24 110 108 CCDS HistoryNCBI Gene:246721Re-query CCDS DB by CCDS ID:43627.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43627.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000333432.9 ENSP00000330898.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000333432.9Link to Ensembl Protein Viewer:ENSP00000330898.7Re-query CCDS DB by Nucleotide ID:ENST00000333432Re-query CCDS DB by Protein ID:ENSP00000330898
Original member Current member EBI ENST00000476151.5 ENSP00000418603.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000476151.5Link to Ensembl Protein Viewer:ENSP00000418603.1Re-query CCDS DB by Nucleotide ID:ENST00000476151Re-query CCDS DB by Protein ID:ENSP00000418603
Original member Current member NCBI NM_032959.7 NP_116581.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_032959.7Link to Protein Sequence:NP_116581.3Re-query CCDS DB by Nucleotide ID:NM_032959Re-query CCDS DB by Protein ID:NP_116581Link to BLAST:NP_116581.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_116581.3 115 Q9GZM3-1 115 100% 0 0

Chromosomal Locations for CCDS 43627.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102666131 102666163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102667090 102667264 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102668915 102669004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 102671552 102671601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (348 nt):
ATGAACGCCCCTCCAGCCTTCGAGTCGTTCTTGCTCTTCGAGGGCGAGAAGATCACCATTAACAAGGACA
CCAAGGTACCCAAGGCCTGCTTATTCACCATCAACAAAGAAGACCACACACTGGGAAACATCATTAAATC
ACAACTCCTAAAAGACCCGCAAGTGCTATTTGCTGGCTACAAAGTCCCCCACCCCTTGGAGCACAAGATC
ATCATCCGAGTGCAGACCACGCCGGACTACAGCCCCCAGGAAGCCTTTACCAACGCCATCACCGACCTCA
TCAGTGAGCTGTCCCTGCTGGAGGAGCGCTTCCGGACGTGCCTGCTTCCCCTTCGCCTTCTGCCGTGA

Translation (115 aa):
MNAPPAFESFLLFEGEKITINKDTKVPKACLFTINKEDHTLGNIIKSQLLKDPQVLFAGYKVPHPLEHKI
IIRVQTTPDYSPQEAFTNAITDLISELSLLEERFRTCLLPLRLLP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH