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Report for CCDS3039.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
3039.1 Public Homo sapiens 3 CHST13 24 110 108 CCDS HistoryNCBI Gene:166012Re-query CCDS DB by CCDS ID:3039.1See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 3039.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000319340.7 ENSP00000317404.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000319340.7Link to Ensembl Protein Viewer:ENSP00000317404.2Re-query CCDS DB by Nucleotide ID:ENST00000319340Re-query CCDS DB by Protein ID:ENSP00000317404
Original member Current member NCBI NM_152889.3 NP_690849.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152889.3Link to Protein Sequence:NP_690849.1Re-query CCDS DB by Nucleotide ID:NM_152889Re-query CCDS DB by Protein ID:NP_690849Link to BLAST:NP_690849.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_690849.1 341 Q8NET6-1 341 100% 0 0

Chromosomal Locations for CCDS 3039.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 126524333 126524429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126536271 126536353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 126541733 126542578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1026 nt):
ATGGGGAGGCGCTGCTGCCGGCGGCGCGTGCTGGCGGCCGCCTGTCTGGGCGCCGCGCTCCTGCTCCTAT
GC
GCCGCGCCCCGCTCCCTGCGCCCGGCATTTGGAAACAGAGCCCTGGGCTCCAGCTGGCTTGGTGGGGA
G
AAGAGAAGCCCCCTGCAGAAGCTCTATGACCTGGATCAGGACCCGCGCTCGACCCTGGCGAAGGTGCAC
CGG
CAGCGGCGCGACCTGCTGAACAGCGCCTGTAGCCGCCACTCACGCCGGCAGCGCCTGCTACAGCCGG
AG
GACCTGCGGCACGTGCTGGTGGACGACGCGCATGGCCTGCTCTACTGCTACGTGCCCAAGGTGGCCTG
C
ACCAACTGGAAGCGCGTGCTGCTGGCGCTGAGCGGCCAAGCCCGCGGCGACCCGCGCGCCATCTCCGCG
CAA
GAGGCGCACGCGCCTGGCCGCCTGCCCTCACTGGCCGACTTCAGCCCCGCCGAGATCAACCGGCGCC
TG
CGCGCCTACTTGGCCTTCCTGTTCGTGCGGGAGCCCTTCGAGCGCCTGGCATCGGCTTACCGCAACAA
G
CTCGCGCGCCCCTACAGCGCCGCCTTCCAGAGGCGCTACGGTGCACGCATCGTTCAGCGCCTGCGGCCG
CGC
GCGCTCCCCGACGCCCGGGCCCGCGGCCACGACGTGCGCTTCGCGGAGTTCCTGGCCTACCTGCTGG
AC
CCGCGCACGCGGCGTGAGGAGCCCTTCAACGAGCACTGGGAGCGCGCGCACGCGCTCTGCCACCCGTG
T
CGCCTCCGCTACGACGTCGTGGGCAAGTTCGAGACGCTGGCGGAGGACGCGGCCTTCGTGCTGGGCCTG
GCG
GGCGCATCCGACCTGAGCTTCCCTGGGCCGCCGCGGCCCCGGGGAGCCGCCGCCTCCCGCGACCTGG
CA
GCGCGCCTCTTCCGGGACATCAGCCCCTTCTACCAGCGGCGCCTCTTCGACCTCTACAAGATGGACTT
C
CTGCTTTTCAACTACTCCGCCCCCTCCTACCTGCGGCTGCTCTAG


Translation (341 aa):
MGRRCCRRRVLAAACLGAALLLLCAAPRSLRPAFGNRALGSSWLGGEKRSPLQKLYDLDQDPRSTLAKVH
R
QRRDLLNSACSRHSRRQRLLQPEDLRHVLVDDAHGLLYCYVPKVACTNWKRVLLALSGQARGDPRAISA
Q
EAHAPGRLPSLADFSPAEINRRLRAYLAFLFVREPFERLASAYRNKLARPYSAAFQRRYGARIVQRLRP
R
ALPDARARGHDVRFAEFLAYLLDPRTRREEPFNEHWERAHALCHPCRLRYDVVGKFETLAEDAAFVLGL
A
GASDLSFPGPPRPRGAAASRDLAARLFRDISPFYQRRLFDLYKMDFLLFNYSAPSYLRLL




Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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