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Report for CCDS13160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13160.1 Public Homo sapiens 20 CST1 24 110 108 CCDS HistoryNCBI Gene:1469Re-query CCDS DB by CCDS ID:13160.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13160.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304749.7 ENSP00000305731.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304749.7Link to Ensembl Protein Viewer:ENSP00000305731.2Re-query CCDS DB by Nucleotide ID:ENST00000304749Re-query CCDS DB by Protein ID:ENSP00000305731
Original member Current member EBI ENST00000398402.1 ENSP00000381439.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398402.1Link to Ensembl Protein Viewer:ENSP00000381439.1Re-query CCDS DB by Nucleotide ID:ENST00000398402Re-query CCDS DB by Protein ID:ENSP00000381439
Original member Current member NCBI NM_001898.3 NP_001889.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001898.3Link to Protein Sequence:NP_001889.2Re-query CCDS DB by Nucleotide ID:NM_001898Re-query CCDS DB by Protein ID:NP_001889Link to BLAST:NP_001889.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001889.2 141 P01037 141 100% 0 0

Chromosomal Locations for CCDS 13160.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 23747816 23747899 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23749016 23749129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 23750639 23750866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (426 nt):
ATGGCCCAGTATCTGAGTACCCTGCTGCTCCTGCTGGCCACCCTAGCTGTGGCCCTGGCCTGGAGCCCCA
AGGAGGAGGATAGGATAATCCCGGGTGGCATCTATAACGCAGACCTCAATGATGAGTGGGTACAGCGTGC
CCTTCACTTCGCCATCAGCGAGTATAACAAGGCCACCAAAGATGACTACTACAGACGTCCGCTGCGGGTA
CTAAGAGCCAGGCAACAGACCGTTGGGGGGGTGAATTACTTCTTCGACGTAGAGGTGGGCCGCACCATAT
GTACCAAGTCCCAGCCCAACTTGGACACCTGTGCCTTCCATGAACAGCCAGAACTGCAGAAGAAACAGTT
GTGCTCTTTCGAGATCTACGAAGTTCCCTGGGAGAACAGAAGGTCCCTGGTGAAATCCAGGTGTCAAGAA
TCCTAG

Translation (141 aa):
MAQYLSTLLLLLATLAVALAWSPKEEDRIIPGGIYNADLNDEWVQRALHFAISEYNKATKDDYYRRPLRV
LRARQQTVGGVNYFFDVEVGRTICTKSQPNLDTCAFHEQPELQKKQLCSFEIYEVPWENRRSLVKSRCQE
S


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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