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Report for CCDS34323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
34323.1 Public Homo sapiens 5 OR2Y1 24 110 108 CCDS HistoryNCBI Gene:134083Re-query CCDS DB by CCDS ID:34323.1See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 3, NCBI annotation release 36.2, Ensembl annotation release 41

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 34323.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307832.3 ENSP00000312403.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000307832.3Link to Ensembl Protein Viewer:ENSP00000312403.2Re-query CCDS DB by Nucleotide ID:ENST00000307832Re-query CCDS DB by Protein ID:ENSP00000312403
Original member Current member NCBI NM_001001657.1 NP_001001657.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001001657.1Link to Protein Sequence:NP_001001657.1Re-query CCDS DB by Nucleotide ID:NM_001001657Re-query CCDS DB by Protein ID:NP_001001657Link to BLAST:NP_001001657.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001001657.1 311 Q8NGV0 311 100% 0 0

Chromosomal Locations for CCDS 34323.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 180739123 180740058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (936 nt):
ATGGGAAGTTTCAACACCAGTTTTGAAGATGGCTTCATTTTGGTGGGATTCTCAGATTGGCCGCAACTGG
AGCCCATCCTGTTTGTCTTTATTTTTATTTTCTACTCCCTAACTCTCTTTGGCAACACCATCATCATCGC
TCTCTCCTGGCTAGACCTTCGGCTGCACACACCTATGTACTTCTTTCTCTCTCATCTGTCCCTCCTGGAC
CTCTGCTTCACCACCAGCACCGTGCCCCAGCTCCTGATCAACCTTTGCGGGGTGGACCGCACCATCACCC
GTGGAGGGTGTGTGGCTCAGCTCTTCATCTACCTAGCCCTGGGCTCCACAGAGTGTGTGCTCCTGGTGGT
GATGGCCTTTGACCGCTATGCTGCTGTCTGTCGTCCACTCCACTACATGGCCATCATGCACCCCCATCTC
TGCCAGACCCTGGCTATCGCCTCCTGGGGTGCGGGTTTCGTGAACTCTCTGATCCAGACAGGTCTCGCAA
TGGCCATGCCTCTCTGTGGCCATCGACTGAATCACTTCTTCTGTGAGATGCCTGTATTTCTGAAGTTGGC
TTGTGCGGACACAGAAGGAACAGAGGCCAAGATGTTTGTGGCCCGAGTCATAGTCGTGGCTGTTCCTGCA
GCACTTATTCTAGGCTCCTATGTGCACATTGCTCATGCAGTGCTGAGGGTGAAGTCAACGGCTGGGCGCA
GAAAGGCTTTTGGGACTTGTGGGTCCCACCTCCTAGTAGTTTTCCTTTTTTATGGCTCAGCCATCTACAC
ATATCTCCAATCCATCCACAATTATTCTGAGCGTGAGGGAAAATTTGTTGCCCTTTTTTATACTATAATT
ACCCCCATTCTCAATCCTCTCATTTATACACTAAGAAACAAGGACGTGAAGGGGGCTCTGTGGAAAGTAC
TATGGAGGGGCAGGGACTCAGGGTAG

Translation (311 aa):
MGSFNTSFEDGFILVGFSDWPQLEPILFVFIFIFYSLTLFGNTIIIALSWLDLRLHTPMYFFLSHLSLLD
LCFTTSTVPQLLINLCGVDRTITRGGCVAQLFIYLALGSTECVLLVVMAFDRYAAVCRPLHYMAIMHPHL
CQTLAIASWGAGFVNSLIQTGLAMAMPLCGHRLNHFFCEMPVFLKLACADTEGTEAKMFVARVIVVAVPA
ALILGSYVHIAHAVLRVKSTAGRRKAFGTCGSHLLVVFLFYGSAIYTYLQSIHNYSEREGKFVALFYTII
TPILNPLIYTLRNKDVKGALWKVLWRGRDSG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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