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Report for CCDS6558.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6558.1 Public Homo sapiens 9 CNTFR 24 110 108 CCDS HistoryNCBI Gene:1271Re-query CCDS DB by CCDS ID:6558.1See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6558.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000351266.8 ENSP00000242338.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000351266.8Link to Ensembl Protein Viewer:ENSP00000242338.4Re-query CCDS DB by Nucleotide ID:ENST00000351266Re-query CCDS DB by Protein ID:ENSP00000242338
Original member Current member EBI ENST00000378980.8 ENSP00000368265.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378980.8Link to Ensembl Protein Viewer:ENSP00000368265.3Re-query CCDS DB by Nucleotide ID:ENST00000378980Re-query CCDS DB by Protein ID:ENSP00000368265
Original member Current member EBI ENST00000610543.4 ENSP00000480451.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000610543.4Link to Ensembl Protein Viewer:ENSP00000480451.1Re-query CCDS DB by Nucleotide ID:ENST00000610543Re-query CCDS DB by Protein ID:ENSP00000480451
Original member Current member NCBI NM_001207011.2 NP_001193940.1 Accepted alive Link to Nucleotide Sequence:NM_001207011.2Link to Protein Sequence:NP_001193940.1Re-query CCDS DB by Nucleotide ID:NM_001207011Re-query CCDS DB by Protein ID:NP_001193940Link to BLAST:NP_001193940.1
Original member Current member NCBI NM_001842.5 NP_001833.1 Accepted alive Link to Nucleotide Sequence:NM_001842.5Link to Protein Sequence:NP_001833.1Re-query CCDS DB by Nucleotide ID:NM_001842Re-query CCDS DB by Protein ID:NP_001833Link to BLAST:NP_001833.1
Original member Current member NCBI NM_147164.3 NP_671693.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_147164.3Link to Protein Sequence:NP_671693.1Re-query CCDS DB by Nucleotide ID:NM_147164Re-query CCDS DB by Protein ID:NP_671693Link to BLAST:NP_671693.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001193940.1 372 P26992 372 100% 0 0
NP_001833.1 372 P26992 372 100% 0 0
NP_671693.1 372 P26992 372 100% 0 0

Chromosomal Locations for CCDS 6558.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 34552071 34552071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34552161 34552329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34552674 34552854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34556255 34556418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34557526 34557692 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34557867 34557984 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34564599 34564832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 34568897 34568981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1119 nt):
ATGGCTGCTCCTGTCCCGTGGGCCTGCTGTGCTGTGCTTGCCGCCGCCGCCGCAGTTGTCTACGCCCAGA
GACACAGTCCACAGGAGGCACCCCATGTGCAGTACGAGCGCCTGGGCTCTGACGTGACACTGCCATGTGG
GACAGCAAACTGGGATGCTGCGGTGACGTGGCGGGTAAATGGGACAGACCTGGCCCCTGACCTGCTCAAC
GGCTCTCAGCTGGTGCTCCATGGCCTGGAACTGGGCCACAGTGGCCTCTACGCCTGCTTCCACCGTGACT
CCTGGCACCTGCGCCACCAAGTCCTGCTGCATGTGGGCTTGCCGCCGCGGGAGCCTGTGCTCAGCTGCCG
CTCCAACACTTACCCCAAGGGCTTCTACTGCAGCTGGCATCTGCCCACCCCCACCTACATTCCCAACACC
TTCAATGTGACTGTGCTGCATGGCTCCAAAATTATGGTCTGTGAGAAGGACCCAGCCCTCAAGAACCGCT
GCCACATTCGCTACATGCACCTGTTCTCCACCATCAAGTACAAGGTCTCCATAAGTGTCAGCAATGCCCT
GGGCCACAATGCCACAGCTATCACCTTTGACGAGTTCACCATTGTGAAGCCTGATCCTCCAGAAAATGTG
GTAGCCCGGCCAGTGCCCAGCAACCCTCGCCGGCTGGAGGTGACGTGGCAGACCCCCTCGACCTGGCCTG
ACCCTGAGTCTTTTCCTCTCAAGTTCTTTCTGCGCTACCGACCCCTCATCCTGGACCAGTGGCAGCATGT
GGAGCTGTCCGACGGCACAGCACACACCATCACAGATGCCTACGCCGGGAAGGAGTACATTATCCAGGTG
GCAGCCAAGGACAATGAGATTGGGACATGGAGTGACTGGAGCGTAGCCGCCCACGCTACGCCCTGGACTG
AGGAACCGCGACACCTCACCACGGAGGCCCAGGCTGCGGAGACCACGACCAGCACCACCAGCTCCCTGGC
ACCCCCACCTACCACGAAGATCTGTGACCCTGGGGAGCTGGGCAGCGGCGGGGGACCCTCGGCACCCTTC
TTGGTCAGCGTCCCCATCACTCTGGCCCTGGCTGCCGCTGCCGCCACTGCCAGCAGTCTCTTGATCTGA

Translation (372 aa):
MAAPVPWACCAVLAAAAAVVYAQRHSPQEAPHVQYERLGSDVTLPCGTANWDAAVTWRVNGTDLAPDLLN
GSQLVLHGLELGHSGLYACFHRDSWHLRHQVLLHVGLPPREPVLSCRSNTYPKGFYCSWHLPTPTYIPNT
FNVTVLHGSKIMVCEKDPALKNRCHIRYMHLFSTIKYKVSISVSNALGHNATAITFDEFTIVKPDPPENV
VARPVPSNPRRLEVTWQTPSTWPDPESFPLKFFLRYRPLILDQWQHVELSDGTAHTITDAYAGKEYIIQV
AAKDNEIGTWSDWSVAAHATPWTEEPRHLTTEAQAAETTTSTTSSLAPPPTTKICDPGELGSGGGPSAPF
LVSVPITLALAAAAATASSLLI


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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