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Report for CCDS9645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9645.1 Public Homo sapiens 14 NPAS3 24 110 108 CCDS HistoryNCBI Gene:64067Re-query CCDS DB by CCDS ID:9645.1Re-query CCDS DB by GeneID:64067See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9645.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000346562.6 ENSP00000319610.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000346562.6Link to Ensembl Protein Viewer:ENSP00000319610.5Re-query CCDS DB by Nucleotide ID:ENST00000346562Re-query CCDS DB by Protein ID:ENSP00000319610
Original member Current member NCBI NM_022123.3 NP_071406.1 Accepted alive Link to Nucleotide Sequence:NM_022123.3Link to Protein Sequence:NP_071406.1Re-query CCDS DB by Nucleotide ID:NM_022123Re-query CCDS DB by Protein ID:NP_071406Link to BLAST:NP_071406.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_071406.1 901 Q8IXF0-4 901 100% 0 0

Chromosomal Locations for CCDS 9645.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 32939317 32939366 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33215182 33215426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33367192 33367268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33560121 33560210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33676211 33676385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33735214 33735332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33774337 33774530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33778466 33778572 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33793897 33794044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33797457 33797581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 33799734 33801109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2706 nt):
ATGGCGCCCACCAAGCCCAGCTTTCAGCAGGATCCTTCCAGGCGAGAACGTTTACAAGCATTGAGAAAGG
AGAAATCCCGAGATGCTGCTCGCTCCCGCCGGGGAAAAGAAAACTTTGAGTTCTATGAATTGGCCAAGTT
GTTGCCTCTTCCTGCAGCCATTACCAGCCAGCTCGACAAGGCATCCATCATTCGACTTACAATTAGCTAT
CTGAAAATGAGGGACTTTGCTAACCAGGGGGACCCTCCGTGGAACTTGCGAATGGAAGGCCCTCCACCTA
ACACATCAGTAAAAGGTGCACAGCGAAGGAGAAGCCCCAGTGCACTAGCCATTGAAGTATTTGAAGCACA
TTTGGGAAGCCACATTTTGCAGTCCCTGGATGGCTTTGTATTTGCACTAAATCAGGAAGGAAAATTTTTG
TACATTTCCGAAACAGTCTCCATCTACCTAGGCCTCTCACAAGTGGAGCTGACAGGCAGCAGTGTCTTTG
ACTATGTCCACCCCGGAGATCACGTGGAGATGGCTGAGCAGCTGGGCATGAAGCTCCCCCCTGGGCGGGG
TCTCCTGTCACAGGGCACTGCTGAGGACGGAGCCAGCTCAGCATCTTCCTCCTCTCAGTCGGAGACCCCC
GAGCCAGTGGAGTCAACCAGCCCCAGTCTGCTAACCACTGACAACACTCTTGAGCGTTCCTTTTTCATCC
GAATGAAATCTACTCTGACCAAACGCGGTGTGCACATCAAATCATCAGGATATAAGGTGATTCACATAAC
AGGCCGGCTACGCCTGAGAGTGTCGCTGTCCCACGGGAGGACCGTCCCCAGCCAAATCATGGGTCTCGTG
GTTGTTGCGCATGCCTTGCCTCCCCCTACGATCAATGAAGTCAGAATTGACTGCCATATGTTCGTCACTC
GAGTAAATATGGACCTCAATATCATTTACTGTGAAAATAGGATTAGTGATTATATGGATCTGACCCCTGT
AGATATCGTAGGGAAGAGATGCTACCACTTCATCCATGCTGAAGACGTGGAGGGCATCAGGCACAGTCAC
TTGGACTTGCTGAATAAGGGTCAGTGTGTGACAAAGTACTATCGCTGGATGCAGAAGAACGGAGGATATA
TTTGGATACAGTCCAGTGCCACCATAGCTATTAATGCCAAGAATGCAAATGAAAAGAATATCATCTGGGT
GAATTACCTTCTTAGCAATCCTGAGTACAAGGACACACCCATGGACATCGCACAGCTCCCCCATCTGCCG
GAGAAAACTTCCGAATCCTCGGAGACATCCGACTCTGAGTCAGACTCTAAAGACACCTCAGGTATTACAG
AGGACAACGAGAACTCCAAGTCCGACGAGAAGGGGAACCAGTCCGAGAACAGCGAAGACCCGGAGCCCGA
CCGGAAGAAGTCGGGCAACGCGTGTGACAACGACATGAACTGCAACGACGACGGCCACAGCTCCAGTAAC
CCGGACAGCCGCGACAGCGACGACAGCTTCGAGCACTCGGACTTTGAGAACCCCAAGGCGGGCGAGGACG
GCTTCGGTGCTCTGGGCGCGATGCAGATCAAGGTGGAGCGCTACGTGGAGAGCGAGTCGGACCTGCGGCT
GCAGAACTGCGAGTCACTCACGTCCGACAGCGCCAAGGACTCGGACAGCGCAGGCGAGGCGGGCGCGCAG
GCCTCCAGCAAGCACCAGAAGCGCAAGAAAAGGCGGAAACGGCAAAAGGGCGGCAGCGCCAGCCGCCGGC
GCCTGTCCAGCGCGTCGAGCCCAGGCGGCCTGGACGCGGGCCTGGTGGAGCCCCCGCGGCTGCTGTCCTC
CCCCAACAGTGCCTCGGTGCTCAAGATCAAGACGGAGATCTCAGAACCCATCAATTTCGACAATGACAGC
AGCATCTGGAACTACCCGCCCAACCGGGAGATCTCCAGGAACGAGTCCCCCTACAGCATGACCAAGCCCC
CCAGCTCTGAGCACTTCCCGTCCCCGCAGGGCGGCGGCGGTGGGGGTGGCGGTGGCGGGGGGCTGCACGT
GGCCATTCCCGACTCGGTCCTCACCCCGCCCGGCGCCGACGGCGCGGCCGCCCGCAAGACTCAGTTCGGC
GCCTCGGCCACCGCGGCCCTGGCCCCCGTCGCCTCCGACCCGCTGTCACCCCCGCTCTCGGCGTCCCCGC
GGGACAAGCACCCCGGGAACGGCGGCGGGGGCGGGGGCGGGGGCGGCGGCGCGGGGGGCGGCGGCCCCAG
CGCGTCCAACTCCTTGCTGTACACTGGGGACCTGGAGGCGCTGCAGAGGTTGCAGGCGGGCAACGTCGTG
CTCCCGCTGGTGCACAGGGTGACCGGGACCCTGGCCGCCACCAGCACGGCCGCGCAGAGGGTCTACACCA
CGGGCACCATCCGCTACGCGCCCGCCGAGGTGACCCTGGCCATGCAGAGCAACCTGCTGCCCAACGCGCA
CGCTGTTAACTTCGTGGACGTTAACAGCCCCGGCTTTGGCCTCGACCCCAAGACGCCCATGGAGATGCTC
TACCACCACGTGCACCGGCTCAACATGTCAGGACCGTTCGGCGGCGCAGTGAGCGCAGCTAGCCTGACGC
AGATGCCCGCCGGCAACGTGTTCACCACGGCCGAGGGACTCTTCTCCACGCTGCCCTTCCCCGTCTACAG
CAACGGCATCCACGCGGCACAGACTCTGGAGCGCAAGGAGGACTGA

Translation (901 aa):
MAPTKPSFQQDPSRRERLQALRKEKSRDAARSRRGKENFEFYELAKLLPLPAAITSQLDKASIIRLTISY
LKMRDFANQGDPPWNLRMEGPPPNTSVKGAQRRRSPSALAIEVFEAHLGSHILQSLDGFVFALNQEGKFL
YISETVSIYLGLSQVELTGSSVFDYVHPGDHVEMAEQLGMKLPPGRGLLSQGTAEDGASSASSSSQSETP
EPVESTSPSLLTTDNTLERSFFIRMKSTLTKRGVHIKSSGYKVIHITGRLRLRVSLSHGRTVPSQIMGLV
VVAHALPPPTINEVRIDCHMFVTRVNMDLNIIYCENRISDYMDLTPVDIVGKRCYHFIHAEDVEGIRHSH
LDLLNKGQCVTKYYRWMQKNGGYIWIQSSATIAINAKNANEKNIIWVNYLLSNPEYKDTPMDIAQLPHLP
EKTSESSETSDSESDSKDTSGITEDNENSKSDEKGNQSENSEDPEPDRKKSGNACDNDMNCNDDGHSSSN
PDSRDSDDSFEHSDFENPKAGEDGFGALGAMQIKVERYVESESDLRLQNCESLTSDSAKDSDSAGEAGAQ
ASSKHQKRKKRRKRQKGGSASRRRLSSASSPGGLDAGLVEPPRLLSSPNSASVLKIKTEISEPINFDNDS
SIWNYPPNREISRNESPYSMTKPPSSEHFPSPQGGGGGGGGGGGLHVAIPDSVLTPPGADGAAARKTQFG
ASATAALAPVASDPLSPPLSASPRDKHPGNGGGGGGGGGGAGGGGPSASNSLLYTGDLEALQRLQAGNVV
LPLVHRVTGTLAATSTAAQRVYTTGTIRYAPAEVTLAMQSNLLPNAHAVNFVDVNSPGFGLDPKTPMEML
YHHVHRLNMSGPFGGAVSAASLTQMPAGNVFTTAEGLFSTLPFPVYSNGIHAAQTLERKED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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