NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9608.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9608.1 Public Homo sapiens 14 NRL 24 110 108 CCDS HistoryNCBI Gene:4901Re-query CCDS DB by CCDS ID:9608.1Re-query CCDS DB by GeneID:4901See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9608.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000396997.1 ENSP00000380193.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000396997.1Link to Ensembl Protein Viewer:ENSP00000380193.1Re-query CCDS DB by Nucleotide ID:ENST00000396997Re-query CCDS DB by Protein ID:ENSP00000380193
Original member Current member EBI ENST00000397002.6 ENSP00000380197.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000397002.6Link to Ensembl Protein Viewer:ENSP00000380197.2Re-query CCDS DB by Nucleotide ID:ENST00000397002Re-query CCDS DB by Protein ID:ENSP00000380197
Original member Current member EBI ENST00000561028.6 ENSP00000454062.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000561028.6Link to Ensembl Protein Viewer:ENSP00000454062.2Re-query CCDS DB by Nucleotide ID:ENST00000561028Re-query CCDS DB by Protein ID:ENSP00000454062
Original member Current member NCBI NM_001354768.3 NP_001341697.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001354768.3Link to Protein Sequence:NP_001341697.1Re-query CCDS DB by Nucleotide ID:NM_001354768Re-query CCDS DB by Protein ID:NP_001341697Link to BLAST:NP_001341697.1
Original member Current member NCBI NM_001354769.1 NP_001341698.1 Accepted alive Link to Nucleotide Sequence:NM_001354769.1Link to Protein Sequence:NP_001341698.1Re-query CCDS DB by Nucleotide ID:NM_001354769Re-query CCDS DB by Protein ID:NP_001341698Link to BLAST:NP_001341698.1
Original member Current member NCBI NM_006177.5 NP_006168.1 Accepted alive Link to Nucleotide Sequence:NM_006177.5Link to Protein Sequence:NP_006168.1Re-query CCDS DB by Nucleotide ID:NM_006177Re-query CCDS DB by Protein ID:NP_006168Link to BLAST:NP_006168.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341697.1 237 P54845-1 237 100% 0 0
NP_001341698.1 237 P54845-1 237 100% 0 0
NP_006168.1 237 P54845-1 237 100% 0 0

Chromosomal Locations for CCDS 9608.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24081236 24081568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24082468 24082848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGCCCTGCCCCCCAGCCCCCTGGCCATGGAATATGTCAATGACTTTGACTTGATGAAGTTTGAGGTAA
AGCGGGAACCCTCTGAGGGCCGACCTGGCCCCCCTACAGCCTCACTGGGCTCCACACCTTACAGCTCAGT
GCCTCCTTCACCCACCTTCAGTGAACCAGGCATGGTGGGGGCAACCGAGGGCACCCGGCCAGGCCTGGAG
GAGCTGTACTGGCTGGCTACCCTGCAGCAGCAGCTGGGGGCTGGGGAGGCATTGGGGCTGAGTCCTGAAG
AGGCCATGGAGCTGCTGCAGGGTCAGGGCCCAGTCCCTGTTGATGGGCCCCATGGCTACTACCCAGGGAG
CCCAGAGGAGACAGGAGCCCAGCACGTCCAGCTGGCAGAGCGGTTTTCCGACGCGGCGCTGGTCTCGATG
TCTGTGCGGGAGCTAAACCGGCAGCTGCGGGGCTGCGGGCGCGACGAGGCGCTGCGGCTGAAGCAGAGGC
GCCGCACGCTGAAGAACCGCGGCTACGCGCAGGCCTGTCGCTCCAAGCGGCTGCAGCAGCGGCGCGGGCT
GGAGGCCGAGCGCGCCCGCCTGGCCGCCCAGCTGGACGCGCTGCGGGCCGAGGTGGCCCGCCTGGCCCGG
GAGCGCGATCTCTACAAGGCTCGCTGTGACCGGCTAACCTCGAGCGGCCCCGGGTCCGGGGACCCCTCCC
ACCTCTTCCTCTGA

Translation (237 aa):
MALPPSPLAMEYVNDFDLMKFEVKREPSEGRPGPPTASLGSTPYSSVPPSPTFSEPGMVGATEGTRPGLE
ELYWLATLQQQLGAGEALGLSPEEAMELLQGQGPVPVDGPHGYYPGSPEETGAQHVQLAERFSDAALVSM
SVRELNRQLRGCGRDEALRLKQRRRTLKNRGYAQACRSKRLQQRRGLEAERARLAAQLDALRAEVARLAR
ERDLYKARCDRLTSSGPGSGDPSHLFL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH