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Report for CCDS91778.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91778.1 Public Homo sapiens 12 STX2 24 110 108 CCDS HistoryNCBI Gene:2054Re-query CCDS DB by CCDS ID:91778.1Re-query CCDS DB by GeneID:2054See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91778.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000706282.1 ENSP00000516327.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000706282.1Link to Ensembl Protein Viewer:ENSP00000516327.1Re-query CCDS DB by Nucleotide ID:ENST00000706282Re-query CCDS DB by Protein ID:ENSP00000516327
Original member Current member NCBI NM_001351049.2 NP_001337978.2 Accepted alive Link to Nucleotide Sequence:NM_001351049.2Link to Protein Sequence:NP_001337978.2Re-query CCDS DB by Nucleotide ID:NM_001351049Re-query CCDS DB by Protein ID:NP_001337978Link to BLAST:NP_001337978.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001337978.2 277 P32856-3 277 99.639% 0 1

Chromosomal Locations for CCDS 91778.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 130791869 130791916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130798525 130798635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130801153 130801290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130801415 130801488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130806982 130807090 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130808631 130808704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130812957 130813031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130821689 130821788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130827193 130827267 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 130839070 130839099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (834 nt):
ATGCGGGACCGGCTGCCAGACCTGACGGCGTGTAGGAAGAATGATGATGGAGACACAGTTGTTGTGGTTG
AGAAAGATCATTTCATGGATGATTTCTTCCATCAGGTGGAGGAGATTAGAAACAGTATTGATAAAATAAC
TCAATATGTTGAAGAAGTAAAGAAAAACCACAGCATCATTCTTTCTGCACCAAACCCGGAAGGAAAAATA
AAAGAAGAGCTTGAAGATCTGAACAAAGAAATCAAGAAAACTGCGAATAAAATTCGAGCCAAGTTAAAGG
CTATTGAACAAAGTTTTGATCAGGATGAGAGTGGGAACCGGACTTCAGTGGATCTTCGGATACGAAGAAC
CCAGCATTCGGTGCTGTCTCGGAAGTTTGTGGAAGCCATGGCGGAGTACAATGAGGCACAGACTCTGTTT
CGGGAGCGGAGCAAAGGCCGCATCCAGCGCCAGCTGGAGATAACTGGGAGAACCACCACAGACGACGAGC
TAGAAGAGATGCTGGAGAGCGGGAAGCCATCCATCTTCACTTCCGACATTATATCAGATTCACAAATTAC
TAGACAAGCTCTCAATGAAATCGAGTCACGTCACAAGGACATCATGAAGCTGGAGACCAGCATCCGAGAG
TTGCATGAGATGTTCATGGACATGGCTATGTTTGTGGAGACTCAGGGTGAAATGATCAACAACATAGAAA
GAAATGTTATGAATGCCACAGACTATGTAGAACACGCTAAAGAAGAAACAAAAAAAGCTATCAAATATCA
GAGCAAGGCAAGAAGGCAACAACATTGTCCTAGCAACCATATCCCAAGAGCCATTTATCCTTGA

Translation (277 aa):
MRDRLPDLTACRKNDDGDTVVVVEKDHFMDDFFHQVEEIRNSIDKITQYVEEVKKNHSIILSAPNPEGKI
KEELEDLNKEIKKTANKIRAKLKAIEQSFDQDESGNRTSVDLRIRRTQHSVLSRKFVEAMAEYNEAQTLF
RERSKGRIQRQLEITGRTTTDDELEEMLESGKPSIFTSDIISDSQITRQALNEIESRHKDIMKLETSIRE
LHEMFMDMAMFVETQGEMINNIERNVMNATDYVEHAKEETKKAIKYQSKARRQQHCPSNHIPRAIYP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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