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Report for CCDS8749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8749.1 Public Homo sapiens 12 SLC38A2 24 110 108 CCDS HistoryNCBI Gene:54407Re-query CCDS DB by CCDS ID:8749.1Re-query CCDS DB by GeneID:54407See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8749.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000256689.10 ENSP00000256689.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000256689.10Link to Ensembl Protein Viewer:ENSP00000256689.5Re-query CCDS DB by Nucleotide ID:ENST00000256689Re-query CCDS DB by Protein ID:ENSP00000256689
Original member Current member NCBI NM_018976.5 NP_061849.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018976.5Link to Protein Sequence:NP_061849.2Re-query CCDS DB by Nucleotide ID:NM_018976Re-query CCDS DB by Protein ID:NP_061849Link to BLAST:NP_061849.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061849.2 506 Q96QD8-1 506 100% 0 0

Chromosomal Locations for CCDS 8749.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 46361111 46361209 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46362284 46362381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46362494 46362638 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46363021 46363145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46363726 46363826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46363924 46364003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46364389 46364556 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46364644 46364702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46365107 46365189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46366864 46366945 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46367076 46367168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46367267 46367340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46370512 46370627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46370776 46370857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 46371178 46371293 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1521 nt):
ATGAAGAAGGCCGAAATGGGACGATTCAGTATTTCCCCGGATGAAGACAGCAGCAGCTACAGTTCCAACA
GCGACTTCAACTACTCCTACCCCACCAAGCAAGCTGCTCTGAAAAGCCATTATGCAGATGTAGATCCTGA
AAACCAGAACTTTTTACTTGAATCGAATTTGGGGAAGAAGAAGTATGAAACAGAATTTCATCCAGGTACT
ACTTCCTTTGGAATGTCAGTATTTAATCTGAGCAATGCGATTGTGGGCAGTGGAATCCTTGGGCTTTCTT
ATGCCATGGCTAATACTGGAATTGCTCTTTTTATAATTCTCTTGACATTTGTGTCAATATTTTCCCTGTA
TTCTGTTCATCTCCTTTTGAAGACTGCCAATGAAGGAGGGTCTTTATTATATGAACAATTGGGATATAAG
GCATTTGGATTAGTTGGAAAGCTTGCAGCATCTGGATCAATTACAATGCAGAACATTGGAGCTATGTCAA
GCTACCTCTTCATAGTGAAATATGAGTTGCCTTTGGTGATCCAGGCATTAACGAACATTGAAGATAAAAC
TGGATTGTGGTATCTGAACGGGAACTATTTGGTTCTGTTGGTGTCATTGGTGGTCATTCTTCCTTTGTCG
CTGTTTAGAAATTTAGGATATTTGGGATATACCAGTGGCCTTTCCTTGTTGTGTATGGTGTTCTTTCTGA
TTGTGGTCATTTGCAAGAAATTTCAGGTTCCGTGTCCTGTGGAAGCTGCTTTGATAATTAACGAAACAAT
AAACACCACCTTAACACAGCCAACAGCTCTTGTACCTGCTTTGTCACATAACGTGACTGAAAATGACTCT
TGCAGACCTCACTATTTTATTTTCAACTCACAGACTGTCTATGCTGTGCCAATTCTGATCTTTTCATTTG
TCTGTCATCCTGCTGTTCTTCCCATCTATGAAGAACTGAAAGACCGCAGCCGTAGAAGAATGATGAATGT
GTCCAAGATTTCATTTTTTGCTATGTTTCTCATGTATCTGCTTGCCGCCCTCTTTGGATACCTAACATTT
TACGAACATGTTGAGTCAGAATTGCTTCATACCTACTCTTCTATCTTGGGAACTGATATTCTTCTTCTCA
TTGTCCGTCTGGCTGTGTTAATGGCTGTGACCCTGACAGTACCAGTAGTTATTTTCCCAATCCGGAGTTC
TGTAACTCACTTGTTGTGTGCATCAAAAGATTTCAGTTGGTGGCGTCATAGTCTCATTACAGTGTCTATC
TTGGCATTTACCAATTTACTTGTCATCTTTGTCCCAACTATTAGGGATATCTTTGGTTTTATTGGTGCAT
CTGCAGCTTCTATGTTGATTTTTATTCTTCCTTCTGCCTTCTATATCAAGTTGGTGAAGAAAGAACCTAT
GAAATCTGTACAAAAGATTGGGGCTTTGTTCTTCCTGTTAAGTGGTGTACTGGTGATGACCGGAAGCATG
GCCTTGATTGTTTTGGATTGGGTACACAATGCACCTGGAGGTGGCCATTAA

Translation (506 aa):
MKKAEMGRFSISPDEDSSSYSSNSDFNYSYPTKQAALKSHYADVDPENQNFLLESNLGKKKYETEFHPGT
TSFGMSVFNLSNAIVGSGILGLSYAMANTGIALFIILLTFVSIFSLYSVHLLLKTANEGGSLLYEQLGYK
AFGLVGKLAASGSITMQNIGAMSSYLFIVKYELPLVIQALTNIEDKTGLWYLNGNYLVLLVSLVVILPLS
LFRNLGYLGYTSGLSLLCMVFFLIVVICKKFQVPCPVEAALIINETINTTLTQPTALVPALSHNVTENDS
CRPHYFIFNSQTVYAVPILIFSFVCHPAVLPIYEELKDRSRRRMMNVSKISFFAMFLMYLLAALFGYLTF
YEHVESELLHTYSSILGTDILLLIVRLAVLMAVTLTVPVVIFPIRSSVTHLLCASKDFSWWRHSLITVSI
LAFTNLLVIFVPTIRDIFGFIGASAASMLIFILPSAFYIKLVKKEPMKSVQKIGALFFLLSGVLVMTGSM
ALIVLDWVHNAPGGGH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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