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Report for CCDS86087.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
86087.1 Public Homo sapiens 10 PTPN20 24 110 108 CCDS HistoryNCBI Gene:26095Re-query CCDS DB by CCDS ID:86087.1Re-query CCDS DB by GeneID:26095See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 22, NCBI annotation release 109, Ensembl annotation release 92

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 86087.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000502254.5 ENSP00000421404.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000502254.5Link to Ensembl Protein Viewer:ENSP00000421404.1Re-query CCDS DB by Nucleotide ID:ENST00000502254Re-query CCDS DB by Protein ID:ENSP00000421404
Original member Current member NCBI NM_001352531.2 NP_001339460.1 Accepted alive Link to Nucleotide Sequence:NM_001352531.2Link to Protein Sequence:NP_001339460.1Re-query CCDS DB by Nucleotide ID:NM_001352531Re-query CCDS DB by Protein ID:NP_001339460Link to BLAST:NP_001339460.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001339460.1 145 Q4JDL3-13 145 100% 0 0

Chromosomal Locations for CCDS 86087.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 46932500 46932533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46940623 46940717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46943918 46944015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46946563 46946675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 46999912 46999974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 47000676 47000710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (438 nt):
ATGTCTTCACCTAGGGACTTTAGAGCAGAGCCTGTAAACGATTATGAGGGAAATGACTCTGAAGCAGAAG
ACTTGAATTTCAGGGAGACTTTGCCTTCATCAAGTCAGGAAAACACACCTAGATCAAAGGTTTTTGAAAA
TAAAGTTAATTCAGAGAAGGTAAAACTTTCTCTTCGGAATTTCCCACATAATGATTATGAGGATGTTTTT
GAAGAGCCTTCAGAAAGTGGCAGTGATCCCAGCATGTGGACAGCCAGAGGCCCCTTCAGAAGAGACAGGT
GGAGCAGTGAGGATGAGGAGGCTGCAGGGCCATCACAGGCTCTCTCCCCTCTACTTTCTGTTCAACATCA
TGGATATAGTGGCCCAAATGAGAGAACAACGTTCTGGCATGGTTCAAACGAAGGAGCAGTATCACTTTTG
TTACGATATTGTGCTTGA

Translation (145 aa):
MSSPRDFRAEPVNDYEGNDSEAEDLNFRETLPSSSQENTPRSKVFENKVNSEKVKLSLRNFPHNDYEDVF
EEPSESGSDPSMWTARGPFRRDRWSSEDEEAAGPSQALSPLLSVQHHGYSGPNERTTFWHGSNEGAVSLL
LRYCA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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