NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS81920.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
81920.1 Public Homo sapiens 15 MEF2A 24 110 108 CCDS HistoryNCBI Gene:4205Re-query CCDS DB by CCDS ID:81920.1Re-query CCDS DB by GeneID:4205See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 20, NCBI annotation release 108, Ensembl annotation release 85

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 81920.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000557942.6 ENSP00000453095.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000557942.6Link to Ensembl Protein Viewer:ENSP00000453095.1Re-query CCDS DB by Nucleotide ID:ENST00000557942Re-query CCDS DB by Protein ID:ENSP00000453095
Original member Current member NCBI NM_001319206.4 NP_001306135.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001319206.4Link to Protein Sequence:NP_001306135.1Re-query CCDS DB by Nucleotide ID:NM_001319206Re-query CCDS DB by Protein ID:NP_001306135Link to BLAST:NP_001306135.1
Original member Current member NCBI NM_001352616.4 NP_001339545.1 Accepted alive Link to Nucleotide Sequence:NM_001352616.4Link to Protein Sequence:NP_001339545.1Re-query CCDS DB by Nucleotide ID:NM_001352616Re-query CCDS DB by Protein ID:NP_001339545Link to BLAST:NP_001339545.1
Original member Current member NCBI NM_001365205.3 NP_001352134.1 Accepted alive Link to Nucleotide Sequence:NM_001365205.3Link to Protein Sequence:NP_001352134.1Re-query CCDS DB by Nucleotide ID:NM_001365205Re-query CCDS DB by Protein ID:NP_001352134Link to BLAST:NP_001352134.1
Original member Current member NCBI NM_001400031.1 NP_001386960.1 Accepted alive Link to Nucleotide Sequence:NM_001400031.1Link to Protein Sequence:NP_001386960.1Re-query CCDS DB by Nucleotide ID:NM_001400031Re-query CCDS DB by Protein ID:NP_001386960Link to BLAST:NP_001386960.1
Original member Current member NCBI NM_001400032.1 NP_001386961.1 Accepted alive Link to Nucleotide Sequence:NM_001400032.1Link to Protein Sequence:NP_001386961.1Re-query CCDS DB by Nucleotide ID:NM_001400032Re-query CCDS DB by Protein ID:NP_001386961Link to BLAST:NP_001386961.1
Original member Current member NCBI NM_001400033.1 NP_001386962.1 Accepted alive Link to Nucleotide Sequence:NM_001400033.1Link to Protein Sequence:NP_001386962.1Re-query CCDS DB by Nucleotide ID:NM_001400033Re-query CCDS DB by Protein ID:NP_001386962Link to BLAST:NP_001386962.1
Original member Current member NCBI NM_001400034.1 NP_001386963.1 Accepted alive Link to Nucleotide Sequence:NM_001400034.1Link to Protein Sequence:NP_001386963.1Re-query CCDS DB by Nucleotide ID:NM_001400034Re-query CCDS DB by Protein ID:NP_001386963Link to BLAST:NP_001386963.1
Original member Current member NCBI NM_001400035.1 NP_001386964.1 Accepted alive Link to Nucleotide Sequence:NM_001400035.1Link to Protein Sequence:NP_001386964.1Re-query CCDS DB by Nucleotide ID:NM_001400035Re-query CCDS DB by Protein ID:NP_001386964Link to BLAST:NP_001386964.1
Original member Current member NCBI NM_001400036.1 NP_001386965.1 Accepted alive Link to Nucleotide Sequence:NM_001400036.1Link to Protein Sequence:NP_001386965.1Re-query CCDS DB by Nucleotide ID:NM_001400036Re-query CCDS DB by Protein ID:NP_001386965Link to BLAST:NP_001386965.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001306135.1 505 Q02078-2 505 100% 0 0
NP_001339545.1 505 Q02078-2 505 100% 0 0
NP_001352134.1 505 Q02078-2 505 100% 0 0
NP_001386960.1 505 Q02078-2 505 100% 0 0
NP_001386961.1 505 Q02078-2 505 100% 0 0
NP_001386962.1 505 Q02078-2 505 100% 0 0
NP_001386963.1 505 Q02078-2 505 100% 0 0
NP_001386964.1 505 Q02078-2 505 100% 0 0
NP_001386965.1 505 Q02078-2 505 100% 0 0

Chromosomal Locations for CCDS 81920.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 99633120 99633173 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99645561 99645764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99671323 99671454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99674393 99674612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99675399 99675458 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99690241 99690428 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99703362 99703385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99706729 99706855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99710634 99710760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 99712390 99712771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1518 nt):
ATGGGGCGGAAGAAAATACAAATCACACGCATAATGGATGAAAGGAACCGACAGGTCACTTTTACAAAGA
GAAAGTTTGGATTAATGAAGAAAGCCTATGAACTTAGTGTGCTCTGTGACTGTGAAATAGCACTCATCAT
TTTCAACAGCTCTAACAAACTGTTTCAATATGCTAGCACTGATATGGACAAAGTTCTTCTCAAGTATACA
GAATATAATGAACCTCATGAAAGCAGAACCAACTCGGATATTGTTGAGACTTTAAGAAAGAAAGGCCTTA
ATGGTTGTGAGAGCCCTGATGCTGACGATTACTTTGAGCACAGTCCACTCTCGGAGGACAGATTCAGCAA
ACTAAATGAAGATAGTGATTTTATTTTCAAACGAGGCCCTCCTGGTCTGCCACCTCAGAACTTTTCAATG
TCTGTCACAGTTCCAGTGACCAGCCCCAATGCTTTGTCCTACACTAACCCAGGGAGTTCACTGGTGTCCC
CATCTTTGGCAGCCAGCTCAACGTTAACAGATTCAAGCATGCTCTCTCCACCTCAAACCACATTACATAG
AAATGTGTCTCCTGGAGCTCCTCAGAGACCACCAAGTACTGGCAATGCAGGTGGGATGTTGAGCACTACA
GACCTCACAGTGCCAAATGGAGCTGGAAGCAGTCCAGTGGGGAATGGATTTGTAAACTCAAGAGCTTCTC
CAAATTTGATTGGAGCTACTGGTGCAAATAGCTTAGGCAAAGTCATGCCTACAAAGTCTCCCCCTCCACC
AGGTGGTGGTAATCTTGGAATGAACAGTAGGAAACCAGATCTTCGAGTTGTCATCCCCCCTTCAAGCAAG
GGCATGATGCCTCCACTATCGGAGGAAGAGGAATTGGAGTTGAATACCCAGAGGATCAGTAGTTCTCAAG
CCACTCAACCTCTTGCTACCCCAGTCGTGTCTGTGACAACCCCAAGCTTGCCTCCGCAAGGACTTGTGTA
CTCAGCAATGCCGACTGCCTACAACACTGATTATTCACTGACCAGCGCTGACCTGTCAGCCCTTCAAGGC
TTCAACTCGCCAGGAATGCTGTCGCTGGGACAGGTGTCGGCCTGGCAGCAGCACCACCTAGGACAAGCAG
CCCTCAGCTCTCTTGTTGCTGGAGGGCAGTTATCTCAGGGTTCCAATTTATCCATTAATACCAACCAAAA
CATCAGCATCAAGTCCGAACCGATTTCACCTCCTCGGGATCGTATGACCCCATCGGGCTTCCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGCCGCCGCCACCACCGCAGCCCCAGCCACAACCCCCGCAGCCCCAGC
CCCGACAGGAAATGGGGCGCTCCCCTGTGGACAGTCTGAGCAGCTCTAGTAGCTCCTATGATGGCAGTGA
TCGGGAGGATCCACGGGGCGACTTCCATTCTCCAATTGTGCTTGGCCGACCCCCAAACACTGAGGACAGA
GAAAGCCCTTCTGTAAAGCGAATGAGGATGGACGCGTGGGTGACCTAA

Translation (505 aa):
MGRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYT
EYNEPHESRTNSDIVETLRKKGLNGCESPDADDYFEHSPLSEDRFSKLNEDSDFIFKRGPPGLPPQNFSM
SVTVPVTSPNALSYTNPGSSLVSPSLAASSTLTDSSMLSPPQTTLHRNVSPGAPQRPPSTGNAGGMLSTT
DLTVPNGAGSSPVGNGFVNSRASPNLIGATGANSLGKVMPTKSPPPPGGGNLGMNSRKPDLRVVIPPSSK
GMMPPLSEEEELELNTQRISSSQATQPLATPVVSVTTPSLPPQGLVYSAMPTAYNTDYSLTSADLSALQG
FNSPGMLSLGQVSAWQQHHLGQAALSSLVAGGQLSQGSNLSINTNQNISIKSEPISPPRDRMTPSGFQQQ
QQQQQQQQPPPPPQPQPQPPQPQPRQEMGRSPVDSLSSSSSSYDGSDREDPRGDFHSPIVLGRPPNTEDR
ESPSVKRMRMDAWVT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH