NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS7678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7678.1 Public Homo sapiens 10 CALY 24 110 108 CCDS HistoryNCBI Gene:50632Re-query CCDS DB by CCDS ID:7678.1Re-query CCDS DB by GeneID:50632See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7678.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000252939.9 ENSP00000252939.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000252939.9Link to Ensembl Protein Viewer:ENSP00000252939.4Re-query CCDS DB by Nucleotide ID:ENST00000252939Re-query CCDS DB by Protein ID:ENSP00000252939
Original member Current member NCBI NM_015722.4 NP_056537.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015722.4Link to Protein Sequence:NP_056537.1Re-query CCDS DB by Nucleotide ID:NM_015722Re-query CCDS DB by Protein ID:NP_056537Link to BLAST:NP_056537.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056537.1 217 Q9NYX4-1 217 100% 0 0

Chromosomal Locations for CCDS 7678.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 133325827 133326120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133326878 133326991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133327905 133328015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 133328855 133328989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGGTGAAGCTGGGCTGCAGCTTCTCTGGGAAGCCAGGTAAAGACCCTGGGGACCAGGATGGGGCTGCCA
TGGACAGTGTGCCTCTGATCAGCCCCTTGGACATCAGCCAGCTCCAGCCGCCACTCCCTGACCAGGTGGT
CATCAAGACACAGACAGAATACCAGCTGTCCTCCCCAGACCAGCAGAATTTCCCTGACCTGGAGGGCCAG
AGGCTGAACTGCAGCCACCCAGAGGAAGGGCGCAGGCTGCCCACCGCACGGATGATCGCCTTCGCCATGG
CGCTACTGGGCTGCGTGCTGATCATGTACAAGGCCATCTGGTACGACCAGTTCACCTGCCCCGACGGCTT
CCTGCTGCGGCACAAGATCTGCACGCCGCTGACCCTGGAGATGTACTACACGGAGATGGACCCCGAGCGC
CACCGCAGCATCCTGGCGGCCATCGGGGCCTACCCGCTGAGCCGCAAGCACGGCACGGAGACGCCGGCGG
CCTGGGGGGACGGCTACCGCGCAGCCAAGGAGGAGCGCAAGGGGCCCACCCAGGCTGGGGCGGCGGCGGC
GGCCACCGAACCCCCCGGGAAGCCGTCGGCCAAGGCGGAGAAGGAGGCGGCGCGGAAGGCGGCCGGGAGC
GCGGCGCCCCCGCCCGCGCAGTGA

Translation (217 aa):
MVKLGCSFSGKPGKDPGDQDGAAMDSVPLISPLDISQLQPPLPDQVVIKTQTEYQLSSPDQQNFPDLEGQ
RLNCSHPEEGRRLPTARMIAFAMALLGCVLIMYKAIWYDQFTCPDGFLLRHKICTPLTLEMYYTEMDPER
HRSILAAIGAYPLSRKHGTETPAAWGDGYRAAKEERKGPTQAGAAAAATEPPGKPSAKAEKEAARKAAGS
AAPPPAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH