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Report for CCDS7602.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7602.1 Public Homo sapiens 10 RAB11FIP2 24 110 108 CCDS HistoryNCBI Gene:22841Re-query CCDS DB by CCDS ID:7602.1Re-query CCDS DB by GeneID:22841See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7602.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355624.8 ENSP00000347839.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355624.8Link to Ensembl Protein Viewer:ENSP00000347839.3Re-query CCDS DB by Nucleotide ID:ENST00000355624Re-query CCDS DB by Protein ID:ENSP00000347839
Original member Current member NCBI NM_014904.3 NP_055719.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_014904.3Link to Protein Sequence:NP_055719.1Re-query CCDS DB by Nucleotide ID:NM_014904Re-query CCDS DB by Protein ID:NP_055719Link to BLAST:NP_055719.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_055719.1 512 Q7L804-1 512 100% 0 0

Chromosomal Locations for CCDS 7602.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 118008998 118009225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118015065 118015110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118038972 118039440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118040123 118040565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 118045811 118046163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1539 nt):
ATGATGCTGTCCGAGCAAGCCCAAAAGTGGTTTCCAACCCACGTGCAGGTCACAGTGCTCCAAGCCAAAG
ATCTGAAGCCAAAAGGCAAAAGTGGTACCAATGACACATACACTATAATTCAGCTGGGCAAGGAAAAGTA
CTCCACCTCTGTAGCTGAGAAAACCCTTGAGCCAGTTTGGAAGGAGGAGGCCTCTTTCGAGCTACCTGGA
TTGCTAATTCAGGGAAGTCCAGAGAAATACATTCTTTTCCTTATAGTTATGCACAGGTCCCTGGTGGGTC
TGGATAAATTTTTAGGGCAGGTGGCAATCAATCTCAATGACATCTTTGAGGACAAACAAAGAAGGAAAAC
AGAGTGGTTTAGATTAGAATCCAAACAAGGAAAACGAATCAAAAACAGGGGTGAGATAAAGGTCAATATT
CAGTTTATGAGGAACAATATGACCGCAAGTATGTTTGACTTATCAATGAAGGACAAAACCAGATCTCCTT
TTGCAAAGTTAAAAGATAAGATGAAGGGTAGAAAAAATGATGGAACATTTTCTGATACGTCTTCTGCAAT
CATTCCAAGTACTCACATGCCCGATGCCAATAGTGAATTTTCAAGTGGTGAAATACAGATGAAATCCAAA
CCAAAAAAGCCTTTTCTCTTGGGTCCTCAGCGACTCTCGTCAGCGCATTCAATGTCTGATTTATCTGGGT
CCCATATGTCTTCTGAGAAACTGAAGGCTGGCACCATAGGTCAAACACATCTTCTCGGACACCAGTTAGA
TTCCTTTGGAACAGTTCCAGAAAGTGGAAGTCTCAAATCTCCACACAGAAGAACATTAAGCTTTGATACT
TCTAAAATGAACCAACCTGACAGCATTGTGGATGAAGGTGAATTGTGTTTCGGAAGACAAAATGACCCAT
TTACAAATGTGACTGCTTCATTACCCCAAAAATTTGCAACACTGCCAAGGAAGAAAAATCCATTTGAAGA
AAGCAGCGAAACATGGGACAGCAGCATGAATTTATTTTCAAAACCAATTGAAATAAGAAAAGAAAATAAA
AGAGAGAAAAGGGAGAAAGTTAGCCTGTTTGAAAGAGTGACTGGAAAAAAAGATAGCAGAAGATCTGATA
AACTTAACAATGGGGGATCTGATAGCCCTTGTGACTTGAAATCACCTAATGCATTTAGTGAAAATCGCCA
GGACTATTTTGATTATGAGTCAACCAATCCATTTACAGCAAAATTCAGGGCTTCAAATATAATGCCATCT
TCAAGTTTTCATATGAGTCCAACAAGCAATGAAGACCTCAGGAAAATCCCGGACAGCAACCCCTTTGATG
CCACTGCAGGGTATCGTAGTCTGACCTATGAAGAGGTTCTACAGGAGCTGGTGAAACACAAAGAACTCCT
TAGGAGGAAAGACACCCACATCCGGGAACTCGAGGACTACATCGACAACCTCCTTGTAAGGGTAATGGAA
GAAACGCCCAGTATTCTCAGAGTGCCGTATGAACCATCCAGGAAAGCTGGCAAATTCTCTAACAGTTAA

Translation (512 aa):
MMLSEQAQKWFPTHVQVTVLQAKDLKPKGKSGTNDTYTIIQLGKEKYSTSVAEKTLEPVWKEEASFELPG
LLIQGSPEKYILFLIVMHRSLVGLDKFLGQVAINLNDIFEDKQRRKTEWFRLESKQGKRIKNRGEIKVNI
QFMRNNMTASMFDLSMKDKTRSPFAKLKDKMKGRKNDGTFSDTSSAIIPSTHMPDANSEFSSGEIQMKSK
PKKPFLLGPQRLSSAHSMSDLSGSHMSSEKLKAGTIGQTHLLGHQLDSFGTVPESGSLKSPHRRTLSFDT
SKMNQPDSIVDEGELCFGRQNDPFTNVTASLPQKFATLPRKKNPFEESSETWDSSMNLFSKPIEIRKENK
REKREKVSLFERVTGKKDSRRSDKLNNGGSDSPCDLKSPNAFSENRQDYFDYESTNPFTAKFRASNIMPS
SSFHMSPTSNEDLRKIPDSNPFDATAGYRSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDNLLVRVME
ETPSILRVPYEPSRKAGKFSNS


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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