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Report for CCDS7601.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7601.1 Public Homo sapiens 10 EMX2 24 110 108 CCDS HistoryNCBI Gene:2018Re-query CCDS DB by CCDS ID:7601.1Re-query CCDS DB by GeneID:2018See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7601.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000553456.5 ENSP00000450962.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000553456.5Link to Ensembl Protein Viewer:ENSP00000450962.3Re-query CCDS DB by Nucleotide ID:ENST00000553456Re-query CCDS DB by Protein ID:ENSP00000450962
Original member Current member NCBI NM_004098.4 NP_004089.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_004098.4Link to Protein Sequence:NP_004089.1Re-query CCDS DB by Nucleotide ID:NM_004098Re-query CCDS DB by Protein ID:NP_004089Link to BLAST:NP_004089.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_004089.1 252 Q04743-1 252 100% 0 0

Chromosomal Locations for CCDS 7601.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 117543268 117543673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117545632 117545816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 117548065 117548232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGTTCCAGCCGGCGCCCAAGCGCTGCTTCACCATCGAGTCGCTGGTGGCCAAGGACAGTCCCCTGCCCG
CCTCGCGCTCCGAGGACCCCATCCGTCCCGCGGCACTCAGCTACGCTAACTCCAGCCCCATAAATCCGTT
CCTCAACGGCTTCCACTCGGCCGCCGCCGCCGCCGCCGGTAGGGGCGTCTACTCCAACCCGGACTTGGTG
TTCGCCGAGGCGGTCTCGCACCCGCCCAACCCCGCCGTGCCAGTGCACCCGGTGCCGCCGCCGCACGCCC
TGGCCGCCCACCCCCTACCCTCCTCGCACTCGCCACACCCCCTATTCGCCTCGCAGCAGCGGGATCCGTC
CACCTTCTACCCCTGGCTCATCCACCGCTACCGATATCTGGGTCATCGCTTCCAAGGGAACGACACTAGC
CCCGAGAGTTTCCTTTTGCACAACGCGCTGGCCCGAAAGCCCAAGCGGATCCGAACCGCCTTCTCCCCGT
CCCAGCTTCTAAGGCTGGAACACGCCTTTGAGAAGAATCACTACGTGGTGGGCGCCGAAAGGAAGCAGCT
GGCACACAGCCTCAGCCTCACGGAAACTCAGGTAAAAGTATGGTTTCAGAACCGAAGAACAAAGTTCAAA
AGGCAGAAGCTGGAGGAAGAAGGCTCAGATTCGCAACAAAAGAAAAAAGGGACGCACCATATTAACCGGT
GGAGAATCGCCACCAAGCAGGCGAGTCCGGAGGAAATAGACGTGACCTCAGATGATTAA

Translation (252 aa):
MFQPAPKRCFTIESLVAKDSPLPASRSEDPIRPAALSYANSSPINPFLNGFHSAAAAAAGRGVYSNPDLV
FAEAVSHPPNPAVPVHPVPPPHALAAHPLPSSHSPHPLFASQQRDPSTFYPWLIHRYRYLGHRFQGNDTS
PESFLLHNALARKPKRIRTAFSPSQLLRLEHAFEKNHYVVGAERKQLAHSLSLTETQVKVWFQNRRTKFK
RQKLEEEGSDSQQKKKGTHHINRWRIATKQASPEEIDVTSDD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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