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Report for CCDS75749.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
75749.1 Public Homo sapiens 8 YTHDF3 24 110 108 CCDS HistoryNCBI Gene:253943Re-query CCDS DB by CCDS ID:75749.1Re-query CCDS DB by GeneID:253943See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 17, NCBI annotation release 106, Ensembl annotation release 76

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 75749.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621890.4 ENSP00000478825.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621890.4Link to Ensembl Protein Viewer:ENSP00000478825.1Re-query CCDS DB by Nucleotide ID:ENST00000621890Re-query CCDS DB by Protein ID:ENSP00000478825
Original member Current member EBI ENST00000617200.1 ENSP00000481497.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000617200.1Link to Ensembl Protein Viewer:ENSP00000481497.1Re-query CCDS DB by Nucleotide ID:ENST00000617200Re-query CCDS DB by Protein ID:ENSP00000481497
Original member Current member EBI ENST00000623280.3 ENSP00000485046.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000623280.3Link to Ensembl Protein Viewer:ENSP00000485046.1Re-query CCDS DB by Nucleotide ID:ENST00000623280Re-query CCDS DB by Protein ID:ENSP00000485046
Original member Current member NCBI NM_001277815.2 NP_001264744.1 Accepted alive Link to Nucleotide Sequence:NM_001277815.2Link to Protein Sequence:NP_001264744.1Re-query CCDS DB by Nucleotide ID:NM_001277815Re-query CCDS DB by Protein ID:NP_001264744Link to BLAST:NP_001264744.1
Original member Current member NCBI NM_001277816.2 NP_001264745.1 Accepted alive Link to Nucleotide Sequence:NM_001277816.2Link to Protein Sequence:NP_001264745.1Re-query CCDS DB by Nucleotide ID:NM_001277816Re-query CCDS DB by Protein ID:NP_001264745Link to BLAST:NP_001264745.1
Original member Current member NCBI NM_001277817.2 NP_001264746.1 Accepted alive Link to Nucleotide Sequence:NM_001277817.2Link to Protein Sequence:NP_001264746.1Re-query CCDS DB by Nucleotide ID:NM_001277817Re-query CCDS DB by Protein ID:NP_001264746Link to BLAST:NP_001264746.1
Original member Current member NCBI NM_001277818.2 NP_001264747.1 Accepted alive Link to Nucleotide Sequence:NM_001277818.2Link to Protein Sequence:NP_001264747.1Re-query CCDS DB by Nucleotide ID:NM_001277818Re-query CCDS DB by Protein ID:NP_001264747Link to BLAST:NP_001264747.1

Chromosomal Locations for CCDS 75749.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 63186165 63187745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 63209683 63209706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGTCAGATCCATACATGCCTAGTTACTATGCTCCATCCATTGGATTTCCATATTCTCTTGGGGAAGCAG
CGTGGTCCACAGCTGGAGACCAGCCTATGCCATATCTGACAACCTATGGACAAATGAGTAATGGAGAACA
TCACTATATACCAGATGGTGTATTTAGTCAACCTGGGGCATTAGGAAATACCCCTCCATTTCTTGGTCAA
CATGGATTTAACTTTTTTCCTGGTAATGCTGATTTCTCTACATGGGGGACAAGTGGATCTCAGGGACAAT
CAACACAAAGTTCTGCTTATAGTAGCAGTTATGGCTATCCACCTAGTTCTCTTGGGAGAGCTATTACTGA
TGGACAGGCTGGATTTGGCAATGATACTTTGAGTAAGGTGCCTGGCATTAGCAGTATTGAGCAAGGCATG
ACTGGACTGAAAATTGGTGGTGACCTGACAGCTGCAGTGACAAAAACTGTAGGTACAGCTTTGAGCAGCA
GTGGTATGACTAGCATTGCAACCAATAGTGTGCCCCCAGTTAGCAGTGCAGCACCTAAACCAACCTCCTG
GGCTGCCATTGCCAGAAAGCCTGCCAAACCTCAACCGAAACTTAAACCCAAGGGCAATGTGGGAATTGGG
GGTTCTGCTGTACCACCACCTCCTATAAAACACAACATGAATATTGGAACTTGGGATGAAAAAGGGTCAG
TGGTAAAGGCTCCACCAACCCAACCAGTTCTGCCTCCTCAAACTATAATCCAGCAGCCTCAGCCATTAAT
TCAACCACCACCATTGGTGCAAAGCCAACTGCCTCAACAGCAGCCTCAACCACCACAACCACAGCAGCAA
CAAGGACCTCAGCCACAGGCCCAGCCTCACCAAGTGCAGCCTCAACAGCAGCAGCTGCAGAATCGCTGGG
TAGCTCCTCGTAACAGGGGAGCAGGCTTCAACCAGAACAATGGAGCGGGCAGTGAAAACTTTGGTTTAGG
TGTTGTACCTGTCAGTGCTTCACCTTCTAGTGTAGAAGTGCATCCCGTGCTGGAAAAGCTAAAGGCCATA
AACAACTATAATCCCAAAGACTTTGATTGGAATCTGAAGAATGGACGTGTGTTTATAATTAAAAGCTACT
CTGAGGATGACATACATCGTTCCATTAAATACTCTATCTGGTGTAGTACTGAGCATGGTAATAAGCGTTT
GGATGCAGCTTACCGTTCCCTGAATGGGAAAGGCCCACTCTATTTACTCTTCAGTGTGAATGGCAGTGGA
CATTTTTGTGGAGTGGCTGAAATGAAGTCTGTTGTGGACTATAATGCGTATGCTGGTGTCTGGTCTCAGG
ATAAGTGGAAGGGCAAATTTGAAGTTAAATGGATCTTTGTCAAAGATGTTCCCAATAACCAATTACGGCA
TATTCGCTTAGAAAATAATGACAACAAACCGGTTACCAATTCAAGGGACACTCAAGAGGTACCCCTAGAA
AAAGCTAAGCAAGTGCTTAAAATAATTGCTACTTTCAAGCATACCACCTCAATCTTTGATGACTTTGCAC
ATTATGAAAAGCGTCAAGAAGAGGAGGAAGCCATGCGTAGGGAGAGAAATAGAAACAAACAATAA

Translation (534 aa):
MSDPYMPSYYAPSIGFPYSLGEAAWSTAGDQPMPYLTTYGQMSNGEHHYIPDGVFSQPGALGNTPPFLGQ
HGFNFFPGNADFSTWGTSGSQGQSTQSSAYSSSYGYPPSSLGRAITDGQAGFGNDTLSKVPGISSIEQGM
TGLKIGGDLTAAVTKTVGTALSSSGMTSIATNSVPPVSSAAPKPTSWAAIARKPAKPQPKLKPKGNVGIG
GSAVPPPPIKHNMNIGTWDEKGSVVKAPPTQPVLPPQTIIQQPQPLIQPPPLVQSQLPQQQPQPPQPQQQ
QGPQPQAQPHQVQPQQQQLQNRWVAPRNRGAGFNQNNGAGSENFGLGVVPVSASPSSVEVHPVLEKLKAI
NNYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLNGKGPLYLLFSVNGSG
HFCGVAEMKSVVDYNAYAGVWSQDKWKGKFEVKWIFVKDVPNNQLRHIRLENNDNKPVTNSRDTQEVPLE
KAKQVLKIIATFKHTTSIFDDFAHYEKRQEEEEAMRRERNRNKQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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