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Report for CCDS6630.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6630.1 Public Homo sapiens 9 APBA1 24 110 108 CCDS HistoryNCBI Gene:320Re-query CCDS DB by CCDS ID:6630.1Re-query CCDS DB by GeneID:320See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6630.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000265381.7 ENSP00000265381.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000265381.7Link to Ensembl Protein Viewer:ENSP00000265381.3Re-query CCDS DB by Nucleotide ID:ENST00000265381Re-query CCDS DB by Protein ID:ENSP00000265381
Original member Current member NCBI NM_001163.4 NP_001154.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001163.4Link to Protein Sequence:NP_001154.2Re-query CCDS DB by Nucleotide ID:NM_001163Re-query CCDS DB by Protein ID:NP_001154Link to BLAST:NP_001154.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001154.2 837 Q02410-1 837 100% 0 0

Chromosomal Locations for CCDS 6630.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 69431327 69431398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69432536 69432676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69440996 69441115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69449584 69449796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69452122 69452301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69456247 69456432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69457053 69457139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69458156 69458188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69467823 69467968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69471656 69471695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69476048 69476143 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 69516011 69517210 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2514 nt):
ATGAACCACTTGGAGGGGTCTGCGGAGGTGGAGGTGACCGACGAGGCGGCAGGTGGGGAGGTGAACGAGT
CGGTGGAGGCCGACCTGGAGCACCCCGAGGTGGAAGAGGAACAGCAGCAGCCGCCGCAGCAGCAGCACTA
TGTGGGCCGCCACCAGCGCGGGCGAGCCCTCGAGGACCTCCGCGCCCAGCTCGGCCAGGAGGAAGAGGAG
CGCGGGGAATGCCTGGCGCGCTCAGCCAGCACGGAGAGCGGCTTCCACAACCACACGGACACCGCCGAGG
GCGACGTGATCGCCGCGGCCCGCGACGGCTACGATGCGGAGCGCGCGCAGGACCCCGAGGACGAGAGCGC
CTATGCTGTGCAGTACCGGCCCGAGGCCGAGGAGTACACGGAGCAGGCAGAGGCCGAGCACGCCGAGGCC
ACGCACCGCCGCGCGCTGCCCAACCACCTGCACTTCCACTCGCTGGAGCACGAGGAAGCCATGAATGCGG
CCTACTCAGGCTACGTCTACACGCACCGGCTCTTCCACCGCGGTGAGGACGAGCCCTACTCCGAGCCCTA
TGCCGACTACGGCGGCCTCCAGGAGCACGTGTACGAGGAGATAGGGGACGCGCCCGAGCTGGACGCACGC
GACGGCCTGCGGCTCTACGAGCAGGAGCGCGACGAGGCGGCCGCGTACCGCCAGGAGGCCCTGGGCGCGC
GGCTGCACCATTACGACGAGCGCTCCGACGGCGAGTCCGACAGCCCCGAGAAGGAGGCCGAGTTCGCGCC
CTACCCGCGCATGGACAGCTACGAGCAGGAGGAGGACATCGACCAGATAGTGGCCGAGGTGAAGCAGAGC
ATGAGCTCGCAGAGCCTCGACAAGGCAGCCGAGGACATGCCTGAGGCCGAGCAGGACCTGGAGCGTCCCC
CTACCCCGGCCGGGGGTCGCCCCGACAGCCCCGGGCTGCAGGCGCCGGCGGGGCAGCAGCGGGCGGTGGG
CCCCGCGGGCGGCGGCGAGGCGGGGCAGCGGTACAGCAAGGAGAAGCGCGATGCCATCTCGCTGGCCATC
AAGGACATCAAGGAGGCCATCGAGGAGGTGAAAACCAGGACCATCCGTTCGCCTTACACCCCCGACGAGC
CCAAAGAGCCCATCTGGGTCATGCGCCAGGACATTAGCCCCACCAGGGACTGTGACGACCAGAGGCCGAT
GGACGGAGATTCTCCGTCTCCTGGCAGCTCCTCCCCCTTGGGTGCAGAGTCATCAAGCACATCTCTTCAC
CCCAGTGACCCTGTGGAAGCGTCCACTAATAAAGAGTCAAGAAAAAGCTTGGCTTCATTCCCAACCTACG
TTGAAGTTCCGGGACCCTGCGACCCCGAAGACTTGATCGATGGAATCATTTTTGCCGCCAATTACCTTGG
CTCCACTCAGCTGCTCTCAGACAAAACTCCTTCCAAAAACGTGCGCATGATGCAGGCCCAGGAAGCCGTA
AGCAGGATCAAGATGGCCCAGAAATTAGCCAAAAGCAGGAAGAAGGCTCCTGAAGGCGAATCTCAGCCAA
TGACTGAAGTGGATCTCTTCATTTCTACCCAGAGAATCAAAGTGCTGAACGCCGACACACAGGAGACAAT
GATGGACCACCCTCTGAGGACCATTTCCTACATTGCGGACATTGGGAACATCGTTGTGCTGATGGCCCGC
CGGCGGATGCCTCGCTCCAACTCCCAGGAGAACGTGGAAGCGTCCCACCCATCCCAGGATGGGAAAAGGC
AGTACAAGATGATCTGCCACGTCTTCGAGTCTGAGGATGCTCAGCTGATTGCACAGTCCATCGGACAGGC
ATTTAGCGTGGCATACCAGGAATTCCTCAGGGCCAATGGGATTAACCCCGAAGATCTCAGCCAGAAGGAG
TATAGTGACCTGCTCAATACCCAGGACATGTACAACGATGACCTGATCCACTTCTCCAAGTCGGAAAACT
GTAAAGATGTTTTCATAGAGAAGCAGAAAGGAGAAATCCTAGGTGTGGTGATTGTGGAGTCTGGCTGGGG
ATCCATCCTCCCCACCGTGATCATTGCCAACATGATGCATGGTGGCCCTGCGGAGAAATCTGGGAAGCTG
AATATCGGTGACCAGATCATGTCCATTAATGGCACCAGCCTGGTGGGCCTGCCTCTGTCCACCTGCCAGA
GCATTATTAAGGGCTTAAAGAATCAGTCCCGAGTCAAGCTGAATATCGTGAGATGTCCTCCGGTGACCAC
CGTGTTAATCAGAAGACCAGACCTTCGCTACCAGCTCGGTTTCAGCGTCCAGAATGGAATTATCTGCAGC
CTCATGCGAGGGGGAATAGCTGAGAGAGGAGGCGTCCGTGTGGGGCACCGGATCATTGAAATCAATGGAC
AGAGCGTCGTGGCCACCCCCCACGAGAAGATCGTCCACATTCTCTCCAATGCTGTTGGGGAGATTCATAT
GAAGACAATGCCAGCCGCGATGTACAGGCTGCTGACGGCCCAGGAGCAGCCTGTTTACATCTGA

Translation (837 aa):
MNHLEGSAEVEVTDEAAGGEVNESVEADLEHPEVEEEQQQPPQQQHYVGRHQRGRALEDLRAQLGQEEEE
RGECLARSASTESGFHNHTDTAEGDVIAAARDGYDAERAQDPEDESAYAVQYRPEAEEYTEQAEAEHAEA
THRRALPNHLHFHSLEHEEAMNAAYSGYVYTHRLFHRGEDEPYSEPYADYGGLQEHVYEEIGDAPELDAR
DGLRLYEQERDEAAAYRQEALGARLHHYDERSDGESDSPEKEAEFAPYPRMDSYEQEEDIDQIVAEVKQS
MSSQSLDKAAEDMPEAEQDLERPPTPAGGRPDSPGLQAPAGQQRAVGPAGGGEAGQRYSKEKRDAISLAI
KDIKEAIEEVKTRTIRSPYTPDEPKEPIWVMRQDISPTRDCDDQRPMDGDSPSPGSSSPLGAESSSTSLH
PSDPVEASTNKESRKSLASFPTYVEVPGPCDPEDLIDGIIFAANYLGSTQLLSDKTPSKNVRMMQAQEAV
SRIKMAQKLAKSRKKAPEGESQPMTEVDLFISTQRIKVLNADTQETMMDHPLRTISYIADIGNIVVLMAR
RRMPRSNSQENVEASHPSQDGKRQYKMICHVFESEDAQLIAQSIGQAFSVAYQEFLRANGINPEDLSQKE
YSDLLNTQDMYNDDLIHFSKSENCKDVFIEKQKGEILGVVIVESGWGSILPTVIIANMMHGGPAEKSGKL
NIGDQIMSINGTSLVGLPLSTCQSIIKGLKNQSRVKLNIVRCPPVTTVLIRRPDLRYQLGFSVQNGIICS
LMRGGIAERGGVRVGHRIIEINGQSVVATPHEKIVHILSNAVGEIHMKTMPAAMYRLLTAQEQPVYI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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