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Report for CCDS6482.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6482.2 Public Homo sapiens 9 BNC2 24 110 108 CCDS HistoryNCBI Gene:54796Re-query CCDS DB by CCDS ID:6482.2Re-query CCDS DB by GeneID:54796See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 6482.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380672.9 ENSP00000370047.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380672.9Link to Ensembl Protein Viewer:ENSP00000370047.3Re-query CCDS DB by Nucleotide ID:ENST00000380672Re-query CCDS DB by Protein ID:ENSP00000370047
Original member Current member NCBI NM_017637.6 NP_060107.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_017637.6Link to Protein Sequence:NP_060107.3Re-query CCDS DB by Nucleotide ID:NM_017637Re-query CCDS DB by Protein ID:NP_060107Link to BLAST:NP_060107.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060107.3 1099 Q6ZN30-1 1099 100% 0 0

Chromosomal Locations for CCDS 6482.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 9 (NC_000009.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 16418989 16419649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 16435555 16437524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 16552530 16552765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 16582983 16583085 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 16727797 16727997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 16738360 16738485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 16870646 16870648 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3300 nt):
ATGGCACACCTTGGGCCCACCCCACCTCCACATAGCCTTAATTACAAATCAGAGGACAGGCTTAGTGAGC
AAGACTGGCCAGCATATTTCAAGGTCCCATGTTGTGGGGTTGATACATCTCAAATTGAGTCAGAAGAGGC
AGAAGTGGATGTGAGAGAAAGAGAGACACAGAGAGACAGAGAGCCAAAGAGGGCAAGAGACTTGACTTTA
AGAGACTCCTGTACTGACAACTCCATGCAGTTCGGAACCAGAACGACTACGGCTGAACCAGGGTTCATGG
GGACATGGCAAAACGCTGATACTAACCTCTTATTCAGAATGTCCCAACAGGCCATCCGTTGCACACTGGT
AAACTGCACATGTGAATGTTTTCAGCCAGGGAAGATTAACCTGAGGACTTGTGATCAGTGTAAACATGGC
TGGGTGGCACATGCCTTGGATAAGCTCAGCACGCAGCACCTGTACCACCCCACCCAAGTGGAGATTGTGC
AGTCCAACGTCGTGTTTGACATCAGCAGCCTGATGCTCTATGGGACACAAGCAGTGCCTGTGCGGCTAAA
GATCCTGCTGGACCGTCTCTTCAGCGTCCTGAAGCAAGAGGAGGTACTGCACATACTGCACGGCCTTGGC
TGGACTCTGCGGGACTATGTCCGAGGATACATCCTTCAGGATGCTGCTGGCAAGGTGCTGGACCGCTGGG
CCATCATGTCTCGAGAAGAGGAAATCATCACCCTTCAGCAGTTTCTGCGGTTTGGAGAAACCAAATCCAT
TGTGGAGCTGATGGCAATTCAGGAGAAAGAAGGGCAGGCCGTGGCTGTACCATCTTCAAAGACAGACTCA
GATATAAGGACTTTCATTGAGAGCAATAATCGCACCAGGAGTCCCAGCCTCCTTGCTCACTTAGAGAACA
GCAATCCTTCCAGCATTCATCACTTCGAAAACATCCCAAACAGCCTTGCATTTCTGCTTCCATTCCAGTA
CATAAACCCTGTCTCAGCACCACTGCTAGGGTTGCCTCCAAATGGGCTACTGTTAGAGCAACCAGGGTTG
AGGCTGCGGGAACCCAGCCTTTCAACTCAGAATGAATATAATGAGAGCAGCGAATCCGAAGTTTCTCCCA
CACCTTATAAGAATGATCAAACACCCAATAGAAATGCCCTGACCAGCATTACTAATGTGGAGCCCAAAAC
CGAGCCAGCCTGTGTCTCTCCCATTCAGAATTCTGCCCCAGTCAGTGATCTAACCAAAACTGAACACCCA
AAAAGCTCATTCCGGATTCATCGGATGAGAAGGATGGGGTCAGCCTCTAGGAAAGGAAGAGTGTTCTGTA
ATGCATGTGGGAAGACATTCTATGACAAAGGTACTCTCAAAATTCATTACAATGCTGTTCACCTGAAGAT
CAAACATCGATGCACCATTGAAGGTTGCAACATGGTCTTTAGCTCCCTCCGAAGTCGTAATCGCCACAGT
GCAAACCCCAATCCTCGCCTTCACATGCCTATGCTAAGGAATAACCGAGATAAAGATTTAATTCGGGCCA
CCTCAGGAGCTGCCACCCCTGTCATAGCAAGTACAAAATCAAATCTGGCACTCACAAGCCCTGGCCGACC
CCCAATGGGTTTTACCACTCCCCCTCTAGACCCTGTCTTGCAAAATCCTCTCCCTAGCCAGCTAGTATTT
TCTGGGCTAAAGACTGTACAACCAGTTCCTCCATTTTATAGAAGTTTACTCACTCCAGGGGAAATGGTGA
GTCCTCCAACCTCCCTCCCAACCAGTCCCATCATTCCAACCAGTGGTACCATAGAGCAGCACCCCCCGCC
ACCCTCTGAGCCAGTAGTGCCAGCAGTGATGATGGCCACCCATGAGCCCAGTGCTGACCTGGCACCCAAG
AAAAAGCCCAGGAAGTCAAGCATGCCTGTGAAGATTGAGAAGGAAATTATTGATACCGCCGATGAGTTTG
ATGATGAAGATGATGACCCCAATGATGGTGGAGCTGTGGTCAATGACATGAGCCATGACAATCATTGTCA
CTCCCAAGAGGAGATGAGCCCAGGCATGTCTGTGAAGGACTTTTCTAAGCATAACAGGACCCGGTGCATT
TCAAGGACTGAAATAAGGAGGGCCGACAGCATGACTTCTGAAGACCAAGAACCTGAGCGGGACTATGAGA
ACGAGTCTGAGTCTTCGGAGCCCAAACTGGGCGAGGAATCCATGGAAGGGGATGAGCACATTCACAGCGA
AGTGAGTGAAAAAGTCCTGATGAATAGTGAGAGGCCTGATGAGAACCACAGTGAGCCCTCTCACCAGGAC
GTCATCAAGGTGAAGGAAGAATTTACAGACCCCACTTACGACATGTTTTACATGAGCCAGTATGGACTGT
ACAATGGTGGGGGTGCCAGCATGGCCGCCTTGCATGAGAGCTTTACATCGTCTCTGAATTATGGCAGCCC
TCAAAAGTTCTCCCCAGAAGGTGACCTATGTTCTAGCCCAGACCCCAAAATCTGTTATGTGTGCAAGAAG
AGTTTCAAAAGCTCCTACAGTGTGAAACTTCACTACAGGAACGTTCACTTGAAAGAGATGCACGTCTGCA
CAGTGGCTGGTTGCAATGCTGCATTCCCCTCTCGCCGAAGCCGAGACAGACACAGTGCCAACATAAACCT
ACATCGTAAACTGTTGACCAAAGAACTCGATGACATGGGCCTGGACTCGTCGCAGCCCTCCCTTAGCAAG
GACCTCCGCGATGAATTTTTGGTGAAGATATATGGTGCCCAGCACCCCATGGGGCTCGATGTCAGGGAAG
ACGCCTCCTCTCCCGCAGGGACTGAAGACTCCCACCTGAACGGGTATGGGAGAGGCATGGCAGAGGACTA
CATGGTCCTTGACTTGAGCACCACCTCCAGCCTCCAGTCCAGCAGCAGTATCCATTCCTCCAGAGAATCC
GACGCAGGCAGCGATGAGGGGATTCTTCTCGATGACATTGACGGGGCGAGTGACAGTGGGGAGTCGGCAC
ACAAGGCCGAGGCCCCTGCCCTCCCTGGCAGCCTAGGGGCTGAAGTTTCAGGATCTCTTATGTTCAGCAG
CTTGTCTGGGAGCAATGGTGGGATCATGTGCAACATTTGCCACAAAATGTACAGCAACAAGGGGACCCTG
AGAGTGCACTACAAAACTGTGCATTTGAGAGAAATGCACAAGTGCAAAGTCCCAGGTTGCAATATGATGT
TTTCCTCTGTACGAAGCCGAAATCGGCACAGTCAGAACCCTAATCTCCACAAAAACATTCCCTTCACTTC
AGTAGATTAG

Translation (1099 aa):
MAHLGPTPPPHSLNYKSEDRLSEQDWPAYFKVPCCGVDTSQIESEEAEVDVRERETQRDREPKRARDLTL
RDSCTDNSMQFGTRTTTAEPGFMGTWQNADTNLLFRMSQQAIRCTLVNCTCECFQPGKINLRTCDQCKHG
WVAHALDKLSTQHLYHPTQVEIVQSNVVFDISSLMLYGTQAVPVRLKILLDRLFSVLKQEEVLHILHGLG
WTLRDYVRGYILQDAAGKVLDRWAIMSREEEIITLQQFLRFGETKSIVELMAIQEKEGQAVAVPSSKTDS
DIRTFIESNNRTRSPSLLAHLENSNPSSIHHFENIPNSLAFLLPFQYINPVSAPLLGLPPNGLLLEQPGL
RLREPSLSTQNEYNESSESEVSPTPYKNDQTPNRNALTSITNVEPKTEPACVSPIQNSAPVSDLTKTEHP
KSSFRIHRMRRMGSASRKGRVFCNACGKTFYDKGTLKIHYNAVHLKIKHRCTIEGCNMVFSSLRSRNRHS
ANPNPRLHMPMLRNNRDKDLIRATSGAATPVIASTKSNLALTSPGRPPMGFTTPPLDPVLQNPLPSQLVF
SGLKTVQPVPPFYRSLLTPGEMVSPPTSLPTSPIIPTSGTIEQHPPPPSEPVVPAVMMATHEPSADLAPK
KKPRKSSMPVKIEKEIIDTADEFDDEDDDPNDGGAVVNDMSHDNHCHSQEEMSPGMSVKDFSKHNRTRCI
SRTEIRRADSMTSEDQEPERDYENESESSEPKLGEESMEGDEHIHSEVSEKVLMNSERPDENHSEPSHQD
VIKVKEEFTDPTYDMFYMSQYGLYNGGGASMAALHESFTSSLNYGSPQKFSPEGDLCSSPDPKICYVCKK
SFKSSYSVKLHYRNVHLKEMHVCTVAGCNAAFPSRRSRDRHSANINLHRKLLTKELDDMGLDSSQPSLSK
DLRDEFLVKIYGAQHPMGLDVREDASSPAGTEDSHLNGYGRGMAEDYMVLDLSTTSSLQSSSSIHSSRES
DAGSDEGILLDDIDGASDSGESAHKAEAPALPGSLGAEVSGSLMFSSLSGSNGGIMCNICHKMYSNKGTL
RVHYKTVHLREMHKCKVPGCNMMFSSVRSRNRHSQNPNLHKNIPFTSVD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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