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Report for CCDS6323.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
6323.1 Public Homo sapiens 8 MED30 24 110 108 CCDS HistoryNCBI Gene:90390Re-query CCDS DB by CCDS ID:6323.1Re-query CCDS DB by GeneID:90390See the combined annotation on chromosome 8 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 6323.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297347.7 ENSP00000297347.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000297347.7Link to Ensembl Protein Viewer:ENSP00000297347.3Re-query CCDS DB by Nucleotide ID:ENST00000297347Re-query CCDS DB by Protein ID:ENSP00000297347
Original member Current member NCBI NM_080651.4 NP_542382.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080651.4Link to Protein Sequence:NP_542382.1Re-query CCDS DB by Nucleotide ID:NM_080651Re-query CCDS DB by Protein ID:NP_542382Link to BLAST:NP_542382.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542382.1 178 Q96HR3-1 178 100% 0 0

Chromosomal Locations for CCDS 6323.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 8 (NC_000008.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8See the combined annotation on chromosome 8 in Sequence Viewer

Chromosome Start Stop Links
8 117520877 117521053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117528651 117528809 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117530723 117530827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8
8 117539883 117539978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 8Link to Ensembl Genome Browser on chromosome 8

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (537 nt):
ATGTCCACCCCTCCGTTGGCCGCGTCGGGGATGGCGCCCGGGCCCTTCGCCGGGCCCCAGGCTCAGCAGG
CCGCCCGGGAAGTCAACACGGCGTCGCTGTGCCGCATCGGGCAGGAGACAGTGCAGGACATCGTGTACCG
CACCATGGAGATCTTCCAGCTCCTGAGGAACATGCAGCTGCCAAATGGTGTCACTTACCACACTGGAACA
TATCAAGACCGGTTAACAAAGCTACAGGATAATCTTCGCCAACTTTCAGTTCTCTTCAGGAAGCTGAGAT
TGGTATATGACAAATGCAATGAAAACTGTGGTGGGATGGATCCCATTCCAGTCGAGCAACTTATTCCATA
TGTGGAAGAAGATGGCTCAAAGAATGATGATCGGGCTGGCCCACCTCGTTTTGCTAGTGAAGAGAGGCGA
GAAATTGCTGAAGTAAATAAAAAACTCAAACAGAAGAATCAACAGCTGAAACAAATTATGGATCAATTAC
GAAATCTCATCTGGGATATAAATGCCATGTTGGCAATGAGGAACTAA

Translation (178 aa):
MSTPPLAASGMAPGPFAGPQAQQAAREVNTASLCRIGQETVQDIVYRTMEIFQLLRNMQLPNGVTYHTGT
YQDRLTKLQDNLRQLSVLFRKLRLVYDKCNENCGGMDPIPVEQLIPYVEEDGSKNDDRAGPPRFASEERR
EIAEVNKKLKQKNQQLKQIMDQLRNLIWDINAMLAMRN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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